Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8931 | 5' | -53.6 | NC_002484.1 | + | 35805 | 0.8 | 0.140168 |
Target: 5'- cGGCUuacCAAGGcucGCGAGCGCGCCAAGc -3' miRNA: 3'- aCCGGua-GUUCC---UGUUCGUGCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 6578 | 0.71 | 0.461094 |
Target: 5'- aGGCCAUCAAGaGACug--GCGCCAc- -3' miRNA: 3'- aCCGGUAGUUC-CUGuucgUGCGGUuc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 36720 | 0.71 | 0.471361 |
Target: 5'- aGcGCCAacggCAGGccGACGAGCAgGCCAGGa -3' miRNA: 3'- aC-CGGUa---GUUC--CUGUUCGUgCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 29100 | 0.71 | 0.502829 |
Target: 5'- aUGGCCAUCgAAGGGCuugguGCuCGCgAAGc -3' miRNA: 3'- -ACCGGUAG-UUCCUGuu---CGuGCGgUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 21210 | 0.69 | 0.568229 |
Target: 5'- cGGCUAUCGAGGcagccgccuaGCAAauuaCGCGCCAAa -3' miRNA: 3'- aCCGGUAGUUCC----------UGUUc---GUGCGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 13290 | 0.69 | 0.590548 |
Target: 5'- cGGCCAUCu-GcGCAAGCGCGUUGAu -3' miRNA: 3'- aCCGGUAGuuCcUGUUCGUGCGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 5862 | 0.69 | 0.601768 |
Target: 5'- aGGCC-UC-GGGcCAccaauuGGCGCGCCAGGu -3' miRNA: 3'- aCCGGuAGuUCCuGU------UCGUGCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 41715 | 0.69 | 0.611889 |
Target: 5'- aGGCCAgugCAAGGcucCAGagauaucGCugGCCGAGc -3' miRNA: 3'- aCCGGUa--GUUCCu--GUU-------CGugCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 7025 | 0.69 | 0.624278 |
Target: 5'- cGGCCAUCccaGAGGACc----CGCCAGGu -3' miRNA: 3'- aCCGGUAG---UUCCUGuucguGCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 37017 | 0.68 | 0.646817 |
Target: 5'- aGGCCGaacUgGAGcGACu-GCGCGCCGAa -3' miRNA: 3'- aCCGGU---AgUUC-CUGuuCGUGCGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 25824 | 0.67 | 0.702719 |
Target: 5'- cUGGUUAgcCGGGGugAAGCcgcccuucaGCGCCAGGc -3' miRNA: 3'- -ACCGGUa-GUUCCugUUCG---------UGCGGUUC- -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 35064 | 0.67 | 0.702719 |
Target: 5'- -cGUCGcCGAGGAUAAGUACGUCAu- -3' miRNA: 3'- acCGGUaGUUCCUGUUCGUGCGGUuc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 3219 | 0.67 | 0.71373 |
Target: 5'- cUGGCCgAUCAuccAGGGCG-GCACcCCGAa -3' miRNA: 3'- -ACCGG-UAGU---UCCUGUuCGUGcGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 45726 | 0.66 | 0.74621 |
Target: 5'- gGGCCuugucuUCAagcGGGACuggcugAAGCGCGUCAAc -3' miRNA: 3'- aCCGGu-----AGU---UCCUG------UUCGUGCGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 46033 | 0.66 | 0.75681 |
Target: 5'- ---gCAUCAAGGccGCGcguaAGCACGCCAAa -3' miRNA: 3'- accgGUAGUUCC--UGU----UCGUGCGGUUc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 34772 | 0.66 | 0.75681 |
Target: 5'- -cGUCAUCGAGGucauCAAGUACGCg--- -3' miRNA: 3'- acCGGUAGUUCCu---GUUCGUGCGguuc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 39821 | 0.66 | 0.767276 |
Target: 5'- cGGCag-CAAGGGCGacuGGUAUGCCu-- -3' miRNA: 3'- aCCGguaGUUCCUGU---UCGUGCGGuuc -5' |
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8931 | 5' | -53.6 | NC_002484.1 | + | 27430 | 0.66 | 0.767276 |
Target: 5'- cGGCCGgcuUCAA--GCAGGCcUGCCAGGc -3' miRNA: 3'- aCCGGU---AGUUccUGUUCGuGCGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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