miRNA display CGI


Results 61 - 80 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 223840 0.68 0.932396
Target:  5'- gGAgGGGAAGGAgGAGGCcgaGGaGGAGGcCGa -3'
miRNA:   3'- -CUgUUCUUUCU-CUCCG---CC-CCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 228898 0.68 0.932396
Target:  5'- cGGCAGGGAGGAGGacgacGCGaGaGAGGACGa -3'
miRNA:   3'- -CUGUUCUUUCUCUc----CGCcC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 196274 0.68 0.932396
Target:  5'- cGGCGAGggGGGaaggaaucgcuGAuGCGGGuGAGGACc -3'
miRNA:   3'- -CUGUUCuuUCU-----------CUcCGCCC-CUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229048 0.68 0.932396
Target:  5'- aGGCAGGAgGAGGGAGGagaGaGGaGAGGAgGa -3'
miRNA:   3'- -CUGUUCU-UUCUCUCCg--C-CC-CUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 221393 0.68 0.932396
Target:  5'- gGGCGGGGcgc--GGGCGGGGAGGcgGCGg -3'
miRNA:   3'- -CUGUUCUuucucUCCGCCCCUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 119543 0.68 0.927305
Target:  5'- gGGCuAGgcGGGGA-GCGGGGAccGGGCGg -3'
miRNA:   3'- -CUGuUCuuUCUCUcCGCCCCU--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11454 0.68 0.927305
Target:  5'- gGACGGGGgccgGGGaAGGGGCGGagaccgcGAGGACGa -3'
miRNA:   3'- -CUGUUCU----UUC-UCUCCGCCc------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 227464 0.68 0.921983
Target:  5'- ----cGggGGAGAGGcCGGGGGcGGcCGg -3'
miRNA:   3'- cuguuCuuUCUCUCC-GCCCCU-CCuGC- -5'
8942 3' -54.7 NC_002512.2 + 229674 0.68 0.921983
Target:  5'- aGGgGAGAGAGAGcGGCGcgacGGGGGGCc -3'
miRNA:   3'- -CUgUUCUUUCUCuCCGCc---CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229499 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 149446 0.68 0.921983
Target:  5'- ---cGGggGGAGAGGaaGGGGAcccgGGACGc -3'
miRNA:   3'- cuguUCuuUCUCUCCg-CCCCU----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 271 0.68 0.921983
Target:  5'- aGGgGAGAGAGAGcGGCGcgacGGGGGGCc -3'
miRNA:   3'- -CUgUUCUUUCUCuCCGCc---CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 95 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 113248 0.68 0.921983
Target:  5'- aGCAGGAgccucggcagcGAGGGGGGCGGccGGcGGGGCa -3'
miRNA:   3'- cUGUUCU-----------UUCUCUCCGCC--CC-UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 201686 0.68 0.921983
Target:  5'- aACGAGGAGGgaccGGAGGUGGuguGGGGGAuCGa -3'
miRNA:   3'- cUGUUCUUUC----UCUCCGCC---CCUCCU-GC- -5'
8942 3' -54.7 NC_002512.2 + 204797 0.68 0.920341
Target:  5'- aGACGcccGGGAGGuccgcgucccGGGGGCGcggcggcuccguccGGGAGGACGa -3'
miRNA:   3'- -CUGU---UCUUUC----------UCUCCGC--------------CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 210276 0.69 0.91643
Target:  5'- --gGGGAGAGGGAGGUGGGcgGAGcgccuGACGa -3'
miRNA:   3'- cugUUCUUUCUCUCCGCCC--CUC-----CUGC- -5'
8942 3' -54.7 NC_002512.2 + 55647 0.69 0.91643
Target:  5'- gGGCgAGGGAGGAGAGGacgacucgacgcCGGGcGGGGCGc -3'
miRNA:   3'- -CUG-UUCUUUCUCUCC------------GCCCcUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 148884 0.69 0.91643
Target:  5'- uGCAAGGuuGGGucuaAGGCGGGaaGGGGAUGg -3'
miRNA:   3'- cUGUUCUuuCUC----UCCGCCC--CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229415 0.69 0.91472
Target:  5'- cGCAcccGGGAGGAGAGG-GGGGAaaaaagcgcaagcgGGAUGa -3'
miRNA:   3'- cUGU---UCUUUCUCUCCgCCCCU--------------CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.