miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 103681 0.67 0.954427
Target:  5'- cGACGucgcAGAGGGcggcGGAcgcGGCGGGaGGGGGCGc -3'
miRNA:   3'- -CUGU----UCUUUC----UCU---CCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 110270 0.67 0.954427
Target:  5'- cGCuGGGgcGGGAGGCGagcGGcGAGGGCGa -3'
miRNA:   3'- cUGuUCUuuCUCUCCGC---CC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 44423 0.67 0.954427
Target:  5'- cGGCAGGAccacggcgaAGGAGcagaGGGCGGacAGGACGg -3'
miRNA:   3'- -CUGUUCU---------UUCUC----UCCGCCccUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 131526 0.67 0.950471
Target:  5'- cGACGccggAGGGAGAcGAGGCGGaGGGGcCGc -3'
miRNA:   3'- -CUGU----UCUUUCU-CUCCGCCcCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 133524 0.67 0.950471
Target:  5'- ----------cGAGGcCGGGGAGGACGa -3'
miRNA:   3'- cuguucuuucuCUCC-GCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 82438 0.67 0.950471
Target:  5'- gGACGAGggGGcgucGGucccgcucccgaAGGCGGGGAagGGGCc -3'
miRNA:   3'- -CUGUUCuuUC----UC------------UCCGCCCCU--CCUGc -5'
8942 3' -54.7 NC_002512.2 + 96402 0.67 0.950471
Target:  5'- aGCAGGGccGAGuGGUucucGGGGAGGAa- -3'
miRNA:   3'- cUGUUCUuuCUCuCCG----CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 109038 0.68 0.946293
Target:  5'- --nGAGGAccGGGGGGGCucGGGGGACGa -3'
miRNA:   3'- cugUUCUU--UCUCUCCGccCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 93748 0.68 0.946293
Target:  5'- gGACGGGGAcggagggcucggAGGGAGG-GaGGGAGGuCGg -3'
miRNA:   3'- -CUGUUCUU------------UCUCUCCgC-CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 131287 0.68 0.946293
Target:  5'- ----cGGAAGAGAGacGCGcGGGAGGuCGg -3'
miRNA:   3'- cuguuCUUUCUCUC--CGC-CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 123174 0.68 0.946293
Target:  5'- -cCGAGGccGAGGccGAGGCGGGacGGGACGa -3'
miRNA:   3'- cuGUUCU--UUCU--CUCCGCCCc-UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 104843 0.68 0.941889
Target:  5'- cGGCu----GGAGcGGCGGGGAGGGa- -3'
miRNA:   3'- -CUGuucuuUCUCuCCGCCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 20888 0.68 0.941889
Target:  5'- cGACGAcGggGGaAGAGGCGc-GAGGACa -3'
miRNA:   3'- -CUGUU-CuuUC-UCUCCGCccCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 123043 0.68 0.937257
Target:  5'- gGAgGAGGAGGAGGcgauGGCGGaagaGGAGGucGCGg -3'
miRNA:   3'- -CUgUUCUUUCUCU----CCGCC----CCUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 40869 0.68 0.937257
Target:  5'- aGACAcGGAGGGGAGggucgcccGCGGaaGAGGACGa -3'
miRNA:   3'- -CUGUuCUUUCUCUC--------CGCCc-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 105497 0.68 0.937257
Target:  5'- uGCAGGGucAGGGAGGaCGGGGGgcucuggcuGGACc -3'
miRNA:   3'- cUGUUCUu-UCUCUCC-GCCCCU---------CCUGc -5'
8942 3' -54.7 NC_002512.2 + 103071 0.68 0.937257
Target:  5'- cGACGGGAcggacuacGGGAGGCgaucccGGGGAcGGGCGc -3'
miRNA:   3'- -CUGUUCUuu------CUCUCCG------CCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 121364 0.68 0.937257
Target:  5'- gGACGGcGGAGAGGGcCGGagaGGAGGGCGa -3'
miRNA:   3'- -CUGUUcUUUCUCUCcGCC---CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229294 0.68 0.936781
Target:  5'- aGACAgauguucGGAGAG-GAGGCaGGaGGAGGAa- -3'
miRNA:   3'- -CUGU-------UCUUUCuCUCCG-CC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 200251 0.68 0.936781
Target:  5'- cGACGGGGAcGAcGAGGacgacgaCGGGGAcgaGGACGa -3'
miRNA:   3'- -CUGUUCUUuCU-CUCC-------GCCCCU---CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.