miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 42300 0.79 0.390533
Target:  5'- uACGGGAcAGAGGGaGCGGGGGGGAUc -3'
miRNA:   3'- cUGUUCUuUCUCUC-CGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 227930 0.79 0.389709
Target:  5'- aGACAgcacagugggaacGGGAAGGGAGGUGGGGAccgaaagcggauGGACGg -3'
miRNA:   3'- -CUGU-------------UCUUUCUCUCCGCCCCU------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 86250 0.8 0.343152
Target:  5'- -cCGGGGGAGAgggccGAGGCGGGGAgGGACGa -3'
miRNA:   3'- cuGUUCUUUCU-----CUCCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229372 0.84 0.210854
Target:  5'- aGCGAGGGAGGGAGGCGGGuGAGaGGCa -3'
miRNA:   3'- cUGUUCUUUCUCUCCGCCC-CUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 140997 0.9 0.094064
Target:  5'- gGGCAcGggGGGGAGcGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUuCuuUCUCUC-CGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229483 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 15293 0.75 0.623823
Target:  5'- gGGCugcAGGAAGAGcgucucgucgcccAGGCGGGaGGGGACGa -3'
miRNA:   3'- -CUGu--UCUUUCUC-------------UCCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229533 0.73 0.714542
Target:  5'- aGAgGAGGGAGAgGAGGCGGucggcGGAGGAgGc -3'
miRNA:   3'- -CUgUUCUUUCU-CUCCGCC-----CCUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 229196 0.73 0.704732
Target:  5'- cGCAGGGGuGGAGAGGaagcaaGGGGAGGAa- -3'
miRNA:   3'- cUGUUCUU-UCUCUCCg-----CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 74674 0.74 0.694863
Target:  5'- gGACGGGAcGGAGGGaC-GGGAGGACGg -3'
miRNA:   3'- -CUGUUCUuUCUCUCcGcCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 131612 0.74 0.684943
Target:  5'- cGACGGGGAcGAGcGGcGCGGGGgcaAGGACGg -3'
miRNA:   3'- -CUGUUCUUuCUC-UC-CGCCCC---UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 103466 0.74 0.684943
Target:  5'- gGGCGGGAggAGGAGAGGCGGcGucGACGg -3'
miRNA:   3'- -CUGUUCU--UUCUCUCCGCCcCucCUGC- -5'
8942 3' -54.7 NC_002512.2 + 38029 0.74 0.684943
Target:  5'- aGACAaaAGAGAGgggacgccGGAGGgGuGGGAGGGCGc -3'
miRNA:   3'- -CUGU--UCUUUC--------UCUCCgC-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 100081 0.74 0.644927
Target:  5'- cGACGAGA---AGAGGCGgaaGGGGGGACu -3'
miRNA:   3'- -CUGUUCUuucUCUCCGC---CCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 13803 0.74 0.644927
Target:  5'- gGAgAAGAAGGAGAGGaGGaGGAGGAg- -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 226428 0.75 0.634879
Target:  5'- uGGCGAGAAAGgaugaGGGGGCGGcGAGGaACGg -3'
miRNA:   3'- -CUGUUCUUUC-----UCUCCGCCcCUCC-UGC- -5'
8942 3' -54.7 NC_002512.2 + 131877 0.75 0.634879
Target:  5'- aGACGGGGAgccGGAGGGGgagaGGGGGGGuCGg -3'
miRNA:   3'- -CUGUUCUU---UCUCUCCg---CCCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 101531 0.75 0.624828
Target:  5'- gGGCGagggGGAAGGAGAcGGCGGcGGcgGGGACGg -3'
miRNA:   3'- -CUGU----UCUUUCUCU-CCGCC-CC--UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11556 0.75 0.624828
Target:  5'- gGACGAGGAGGAcGAGGgcuaCGGGGAGcACGa -3'
miRNA:   3'- -CUGUUCUUUCU-CUCC----GCCCCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 13759 0.75 0.624828
Target:  5'- aGCGGGAAGGAGAGGaGGGaGAGGGa- -3'
miRNA:   3'- cUGUUCUUUCUCUCCgCCC-CUCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.