miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 12889 0.67 0.961684
Target:  5'- cGCGGGAGAacGAGAGGCGGgcgcagcacauGGAGuGCGc -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-----------CCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 85103 0.67 0.961684
Target:  5'- -cCAcGAGGGGGAGGuCGGGGucAGGAa- -3'
miRNA:   3'- cuGUuCUUUCUCUCC-GCCCC--UCCUgc -5'
8942 3' -54.7 NC_002512.2 + 88259 0.67 0.961684
Target:  5'- cGGCGGuGuuGGAGAGGUGGcGGcaggcgugucGGGACGc -3'
miRNA:   3'- -CUGUU-CuuUCUCUCCGCC-CC----------UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 133831 0.67 0.961684
Target:  5'- aGAgGAGGAGG-GAGGCcucuccGGAGGACa -3'
miRNA:   3'- -CUgUUCUUUCuCUCCGcc----CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 226997 0.67 0.963033
Target:  5'- aGC-AGAGGGuGAGGCGGcGcgagcuggagaaacuGAGGACGg -3'
miRNA:   3'- cUGuUCUUUCuCUCCGCC-C---------------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 133781 0.67 0.964994
Target:  5'- cGACGAcGAcGGcGGcGGCGGGGAcGACGg -3'
miRNA:   3'- -CUGUU-CUuUCuCU-CCGCCCCUcCUGC- -5'
8942 3' -54.7 NC_002512.2 + 34917 0.67 0.964994
Target:  5'- aGAgGAGGAcGAGAcgacGGCGGGGucgcGGcGACGg -3'
miRNA:   3'- -CUgUUCUUuCUCU----CCGCCCC----UC-CUGC- -5'
8942 3' -54.7 NC_002512.2 + 228898 0.68 0.932396
Target:  5'- cGGCAGGGAGGAGGacgacGCGaGaGAGGACGa -3'
miRNA:   3'- -CUGUUCUUUCUCUc----CGCcC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11454 0.68 0.927305
Target:  5'- gGACGGGGgccgGGGaAGGGGCGGagaccgcGAGGACGa -3'
miRNA:   3'- -CUGUUCU----UUC-UCUCCGCCc------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 109038 0.68 0.946293
Target:  5'- --nGAGGAccGGGGGGGCucGGGGGACGa -3'
miRNA:   3'- cugUUCUU--UCUCUCCGccCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 93748 0.68 0.946293
Target:  5'- gGACGGGGAcggagggcucggAGGGAGG-GaGGGAGGuCGg -3'
miRNA:   3'- -CUGUUCUU------------UCUCUCCgC-CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 123043 0.68 0.937257
Target:  5'- gGAgGAGGAGGAGGcgauGGCGGaagaGGAGGucGCGg -3'
miRNA:   3'- -CUgUUCUUUCUCU----CCGCC----CCUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 20888 0.68 0.941889
Target:  5'- cGACGAcGggGGaAGAGGCGc-GAGGACa -3'
miRNA:   3'- -CUGUU-CuuUC-UCUCCGCccCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 40869 0.68 0.937257
Target:  5'- aGACAcGGAGGGGAGggucgcccGCGGaaGAGGACGa -3'
miRNA:   3'- -CUGUuCUUUCUCUC--------CGCCc-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 105497 0.68 0.937257
Target:  5'- uGCAGGGucAGGGAGGaCGGGGGgcucuggcuGGACc -3'
miRNA:   3'- cUGUUCUu-UCUCUCC-GCCCCU---------CCUGc -5'
8942 3' -54.7 NC_002512.2 + 103071 0.68 0.937257
Target:  5'- cGACGGGAcggacuacGGGAGGCgaucccGGGGAcGGGCGc -3'
miRNA:   3'- -CUGUUCUuu------CUCUCCG------CCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 104843 0.68 0.941889
Target:  5'- cGGCu----GGAGcGGCGGGGAGGGa- -3'
miRNA:   3'- -CUGuucuuUCUCuCCGCCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 131287 0.68 0.946293
Target:  5'- ----cGGAAGAGAGacGCGcGGGAGGuCGg -3'
miRNA:   3'- cuguuCUUUCUCUC--CGC-CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 123174 0.68 0.946293
Target:  5'- -cCGAGGccGAGGccGAGGCGGGacGGGACGa -3'
miRNA:   3'- cuGUUCU--UUCU--CUCCGCCCc-UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 201686 0.68 0.921983
Target:  5'- aACGAGGAGGgaccGGAGGUGGuguGGGGGAuCGa -3'
miRNA:   3'- cUGUUCUUUC----UCUCCGCC---CCUCCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.