Results 21 - 40 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8942 | 3' | -54.7 | NC_002512.2 | + | 113266 | 0.66 | 0.975987 |
Target: 5'- aGGCGuucacGAAGGGGggccacAGGCGGGGgucgugcAGGGCGc -3' miRNA: 3'- -CUGUu----CUUUCUC------UCCGCCCC-------UCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 29557 | 0.66 | 0.978569 |
Target: 5'- cGACAGG-AGGAcgccGGCGGGaagccgcuccccGAGGGCGg -3' miRNA: 3'- -CUGUUCuUUCUcu--CCGCCC------------CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 190637 | 0.66 | 0.975987 |
Target: 5'- gGACAGGAGGaguucGAGAGGUGGacGGuacagucGGGACa -3' miRNA: 3'- -CUGUUCUUU-----CUCUCCGCC--CC-------UCCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 103928 | 0.66 | 0.978569 |
Target: 5'- -cCGAGGGugugucgucGAGGGGCGGaagaggaaaGGAGGACa -3' miRNA: 3'- cuGUUCUUu--------CUCUCCGCC---------CCUCCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 101775 | 0.66 | 0.971001 |
Target: 5'- cGGCGGGAAcccucgggaGGAGAGGCccGGGucGGCGc -3' miRNA: 3'- -CUGUUCUU---------UCUCUCCGc-CCCucCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 44423 | 0.67 | 0.954427 |
Target: 5'- cGGCAGGAccacggcgaAGGAGcagaGGGCGGacAGGACGg -3' miRNA: 3'- -CUGUUCU---------UUCUC----UCCGCCccUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 133781 | 0.67 | 0.964994 |
Target: 5'- cGACGAcGAcGGcGGcGGCGGGGAcGACGg -3' miRNA: 3'- -CUGUU-CUuUCuCU-CCGCCCCUcCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 226997 | 0.67 | 0.963033 |
Target: 5'- aGC-AGAGGGuGAGGCGGcGcgagcuggagaaacuGAGGACGg -3' miRNA: 3'- cUGuUCUUUCuCUCCGCC-C---------------CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 133831 | 0.67 | 0.961684 |
Target: 5'- aGAgGAGGAGG-GAGGCcucuccGGAGGACa -3' miRNA: 3'- -CUgUUCUUUCuCUCCGcc----CCUCCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 88259 | 0.67 | 0.961684 |
Target: 5'- cGGCGGuGuuGGAGAGGUGGcGGcaggcgugucGGGACGc -3' miRNA: 3'- -CUGUU-CuuUCUCUCCGCC-CC----------UCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 85103 | 0.67 | 0.961684 |
Target: 5'- -cCAcGAGGGGGAGGuCGGGGucAGGAa- -3' miRNA: 3'- cuGUuCUUUCUCUCC-GCCCC--UCCUgc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 12889 | 0.67 | 0.961684 |
Target: 5'- cGCGGGAGAacGAGAGGCGGgcgcagcacauGGAGuGCGc -3' miRNA: 3'- cUGUUCUUU--CUCUCCGCC-----------CCUCcUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 118943 | 0.67 | 0.958163 |
Target: 5'- cGCGAGcucGAGGGGAGcGUGGGGcGGcGGCGg -3' miRNA: 3'- cUGUUC---UUUCUCUC-CGCCCC-UC-CUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 110270 | 0.67 | 0.954427 |
Target: 5'- cGCuGGGgcGGGAGGCGagcGGcGAGGGCGa -3' miRNA: 3'- cUGuUCUuuCUCUCCGC---CC-CUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 34917 | 0.67 | 0.964994 |
Target: 5'- aGAgGAGGAcGAGAcgacGGCGGGGucgcGGcGACGg -3' miRNA: 3'- -CUgUUCUUuCUCU----CCGCCCC----UC-CUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 133524 | 0.67 | 0.950471 |
Target: 5'- ----------cGAGGcCGGGGAGGACGa -3' miRNA: 3'- cuguucuuucuCUCC-GCCCCUCCUGC- -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 82438 | 0.67 | 0.950471 |
Target: 5'- gGACGAGggGGcgucGGucccgcucccgaAGGCGGGGAagGGGCc -3' miRNA: 3'- -CUGUUCuuUC----UC------------UCCGCCCCU--CCUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 75677 | 0.67 | 0.964672 |
Target: 5'- cGCGAGAGAcgacgauGGGGGGUGGGGGaaGACa -3' miRNA: 3'- cUGUUCUUU-------CUCUCCGCCCCUc-CUGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 144268 | 0.67 | 0.961684 |
Target: 5'- aGCGGGcGAAGucccAGAGGCGGcGGAGGcACc -3' miRNA: 3'- cUGUUC-UUUC----UCUCCGCC-CCUCC-UGc -5' |
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8942 | 3' | -54.7 | NC_002512.2 | + | 220012 | 0.67 | 0.964994 |
Target: 5'- cGGCGGGuc-GAGAGGCcgcuccgucucGGGGuccGGGCGa -3' miRNA: 3'- -CUGUUCuuuCUCUCCG-----------CCCCu--CCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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