miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 4525 0.66 0.976231
Target:  5'- gGugGAGGAGGAGAagcGGCGacGGuGAGG-CGg -3'
miRNA:   3'- -CugUUCUUUCUCU---CCGC--CC-CUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 6398 0.66 0.968098
Target:  5'- cGACGGGc-AGGGAGGCggcggcggcgcuGGGGAaGGCGg -3'
miRNA:   3'- -CUGUUCuuUCUCUCCG------------CCCCUcCUGC- -5'
8942 3' -54.7 NC_002512.2 + 113266 0.66 0.975987
Target:  5'- aGGCGuucacGAAGGGGggccacAGGCGGGGgucgugcAGGGCGc -3'
miRNA:   3'- -CUGUu----CUUUCUC------UCCGCCCC-------UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 101775 0.66 0.971001
Target:  5'- cGGCGGGAAcccucgggaGGAGAGGCccGGGucGGCGc -3'
miRNA:   3'- -CUGUUCUU---------UCUCUCCGc-CCCucCUGC- -5'
8942 3' -54.7 NC_002512.2 + 190637 0.66 0.975987
Target:  5'- gGACAGGAGGaguucGAGAGGUGGacGGuacagucGGGACa -3'
miRNA:   3'- -CUGUUCUUU-----CUCUCCGCC--CC-------UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 226997 0.67 0.963033
Target:  5'- aGC-AGAGGGuGAGGCGGcGcgagcuggagaaacuGAGGACGg -3'
miRNA:   3'- cUGuUCUUUCuCUCCGCC-C---------------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 118943 0.67 0.958163
Target:  5'- cGCGAGcucGAGGGGAGcGUGGGGcGGcGGCGg -3'
miRNA:   3'- cUGUUC---UUUCUCUC-CGCCCC-UC-CUGC- -5'
8942 3' -54.7 NC_002512.2 + 12889 0.67 0.961684
Target:  5'- cGCGGGAGAacGAGAGGCGGgcgcagcacauGGAGuGCGc -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-----------CCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 85103 0.67 0.961684
Target:  5'- -cCAcGAGGGGGAGGuCGGGGucAGGAa- -3'
miRNA:   3'- cuGUuCUUUCUCUCC-GCCCC--UCCUgc -5'
8942 3' -54.7 NC_002512.2 + 88259 0.67 0.961684
Target:  5'- cGGCGGuGuuGGAGAGGUGGcGGcaggcgugucGGGACGc -3'
miRNA:   3'- -CUGUU-CuuUCUCUCCGCC-CC----------UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 133831 0.67 0.961684
Target:  5'- aGAgGAGGAGG-GAGGCcucuccGGAGGACa -3'
miRNA:   3'- -CUgUUCUUUCuCUCCGcc----CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 110270 0.67 0.954427
Target:  5'- cGCuGGGgcGGGAGGCGagcGGcGAGGGCGa -3'
miRNA:   3'- cUGuUCUuuCUCUCCGC---CC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 44423 0.67 0.954427
Target:  5'- cGGCAGGAccacggcgaAGGAGcagaGGGCGGacAGGACGg -3'
miRNA:   3'- -CUGUUCU---------UUCUC----UCCGCCccUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 133524 0.67 0.950471
Target:  5'- ----------cGAGGcCGGGGAGGACGa -3'
miRNA:   3'- cuguucuuucuCUCC-GCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 75677 0.67 0.964672
Target:  5'- cGCGAGAGAcgacgauGGGGGGUGGGGGaaGACa -3'
miRNA:   3'- cUGUUCUUU-------CUCUCCGCCCCUc-CUGc -5'
8942 3' -54.7 NC_002512.2 + 144268 0.67 0.961684
Target:  5'- aGCGGGcGAAGucccAGAGGCGGcGGAGGcACc -3'
miRNA:   3'- cUGUUC-UUUC----UCUCCGCC-CCUCC-UGc -5'
8942 3' -54.7 NC_002512.2 + 220012 0.67 0.964994
Target:  5'- cGGCGGGuc-GAGAGGCcgcuccgucucGGGGuccGGGCGa -3'
miRNA:   3'- -CUGUUCuuuCUCUCCG-----------CCCCu--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 34917 0.67 0.964994
Target:  5'- aGAgGAGGAcGAGAcgacGGCGGGGucgcGGcGACGg -3'
miRNA:   3'- -CUgUUCUUuCUCU----CCGCCCC----UC-CUGC- -5'
8942 3' -54.7 NC_002512.2 + 133781 0.67 0.964994
Target:  5'- cGACGAcGAcGGcGGcGGCGGGGAcGACGg -3'
miRNA:   3'- -CUGUU-CUuUCuCU-CCGCCCCUcCUGC- -5'
8942 3' -54.7 NC_002512.2 + 82438 0.67 0.950471
Target:  5'- gGACGAGggGGcgucGGucccgcucccgaAGGCGGGGAagGGGCc -3'
miRNA:   3'- -CUGUUCuuUC----UC------------UCCGCCCCU--CCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.