miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 229470 0.77 0.516107
Target:  5'- --gGAGGAGGGGAagGGgGGGGAGGugGa -3'
miRNA:   3'- cugUUCUUUCUCU--CCgCCCCUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 66 0.77 0.516107
Target:  5'- --gGAGGAGGGGAagGGgGGGGAGGugGa -3'
miRNA:   3'- cugUUCUUUCUCU--CCgCCCCUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 149603 0.77 0.516107
Target:  5'- cGACGAGGAcaugcgcgggGGAGAGucCGGGGAGGACc -3'
miRNA:   3'- -CUGUUCUU----------UCUCUCc-GCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 228289 0.77 0.525739
Target:  5'- gGAgAGGGAGGAcgggacccGGGGCGGGG-GGACGa -3'
miRNA:   3'- -CUgUUCUUUCU--------CUCCGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229063 0.77 0.525739
Target:  5'- gGAgGGGAAGGAGAGGgGGGaaacaGAGGugGa -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCCC-----CUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 200352 0.77 0.525739
Target:  5'- cGGCGgacGGggGGAcGGGGCGGGGggugaGGGGCGg -3'
miRNA:   3'- -CUGU---UCuuUCU-CUCCGCCCC-----UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 78713 0.76 0.545198
Target:  5'- -cCGAGAGGGAGAGaGCGGGcGGGGCu -3'
miRNA:   3'- cuGUUCUUUCUCUC-CGCCCcUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 108386 0.76 0.555016
Target:  5'- gGGCGGGggGcgagcccgguGGGuGGgGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCuuU----------CUCuCCgCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 129843 0.76 0.555016
Target:  5'- cGCGAuGGAGGcGGAGGCGGaggcGGAGGACGg -3'
miRNA:   3'- cUGUU-CUUUC-UCUCCGCC----CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 79 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229483 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 102662 0.76 0.558957
Target:  5'- aGACcGGGGAGAG-GGCggccgcccgcuguccGGGGAGGACGu -3'
miRNA:   3'- -CUGuUCUUUCUCuCCG---------------CCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 127300 0.75 0.604751
Target:  5'- cGACGAGGAGGAGAGGauGGaGAccaGGGCGu -3'
miRNA:   3'- -CUGUUCUUUCUCUCCgcCC-CU---CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 15293 0.75 0.623823
Target:  5'- gGGCugcAGGAAGAGcgucucgucgcccAGGCGGGaGGGGACGa -3'
miRNA:   3'- -CUGu--UCUUUCUC-------------UCCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 13759 0.75 0.624828
Target:  5'- aGCGGGAAGGAGAGGaGGGaGAGGGa- -3'
miRNA:   3'- cUGUUCUUUCUCUCCgCCC-CUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 193361 0.75 0.624828
Target:  5'- cGugGAGGAGGAGuucgucgccgcGGGCGGGGAcGACa -3'
miRNA:   3'- -CugUUCUUUCUC-----------UCCGCCCCUcCUGc -5'
8942 3' -54.7 NC_002512.2 + 101531 0.75 0.624828
Target:  5'- gGGCGagggGGAAGGAGAcGGCGGcGGcgGGGACGg -3'
miRNA:   3'- -CUGU----UCUUUCUCU-CCGCC-CC--UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11556 0.75 0.624828
Target:  5'- gGACGAGGAGGAcGAGGgcuaCGGGGAGcACGa -3'
miRNA:   3'- -CUGUUCUUUCU-CUCC----GCCCCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 226428 0.75 0.634879
Target:  5'- uGGCGAGAAAGgaugaGGGGGCGGcGAGGaACGg -3'
miRNA:   3'- -CUGUUCUUUC-----UCUCCGCCcCUCC-UGC- -5'
8942 3' -54.7 NC_002512.2 + 131877 0.75 0.634879
Target:  5'- aGACGGGGAgccGGAGGGGgagaGGGGGGGuCGg -3'
miRNA:   3'- -CUGUUCUU---UCUCUCCg---CCCCUCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.