miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 228753 0.75 0.634879
Target:  5'- --uGAGAGAGGGAgGGCGGaGGAGG-CGa -3'
miRNA:   3'- cugUUCUUUCUCU-CCGCC-CCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 221289 0.74 0.644927
Target:  5'- --gAGGggGGGGAGGcCGGGGucGGCGg -3'
miRNA:   3'- cugUUCuuUCUCUCC-GCCCCucCUGC- -5'
8942 3' -54.7 NC_002512.2 + 13803 0.74 0.644927
Target:  5'- gGAgAAGAAGGAGAGGaGGaGGAGGAg- -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 100081 0.74 0.644927
Target:  5'- cGACGAGA---AGAGGCGgaaGGGGGGACu -3'
miRNA:   3'- -CUGUUCUuucUCUCCGC---CCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 192 0.74 0.652959
Target:  5'- gGGCGAGAaggggcccgggcgGAGAGGGaGCGGGGAccgaagggcaggcGGGCGg -3'
miRNA:   3'- -CUGUUCU-------------UUCUCUC-CGCCCCU-------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229595 0.74 0.652959
Target:  5'- gGGCGAGAaggggcccgggcgGAGAGGGaGCGGGGAccgaagggcaggcGGGCGg -3'
miRNA:   3'- -CUGUUCU-------------UUCUCUC-CGCCCCU-------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 104628 0.74 0.654966
Target:  5'- gGACGGGGGAGAGGGGgaGGGcggcgcgaacGAGGGCGc -3'
miRNA:   3'- -CUGUUCUUUCUCUCCg-CCC----------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228412 0.74 0.664987
Target:  5'- gGACGGGGcgcuGGGGGGCGGGGgcGGGaACGg -3'
miRNA:   3'- -CUGUUCUuu--CUCUCCGCCCC--UCC-UGC- -5'
8942 3' -54.7 NC_002512.2 + 189742 0.74 0.664987
Target:  5'- gGACAGGAGAG-GAGGUcuucgaGGcGGGGGACa -3'
miRNA:   3'- -CUGUUCUUUCuCUCCG------CC-CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 204613 0.74 0.683949
Target:  5'- aGCGAGGAGGAGgacgacgacgaagGGGaCGGGGAccgGGACGg -3'
miRNA:   3'- cUGUUCUUUCUC-------------UCC-GCCCCU---CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 103466 0.74 0.684943
Target:  5'- gGGCGGGAggAGGAGAGGCGGcGucGACGg -3'
miRNA:   3'- -CUGUUCU--UUCUCUCCGCCcCucCUGC- -5'
8942 3' -54.7 NC_002512.2 + 131612 0.74 0.684943
Target:  5'- cGACGGGGAcGAGcGGcGCGGGGgcaAGGACGg -3'
miRNA:   3'- -CUGUUCUUuCUC-UC-CGCCCC---UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 193602 0.74 0.684943
Target:  5'- cGACAGGGGAGuGAcGCGGGGAuGGGgGg -3'
miRNA:   3'- -CUGUUCUUUCuCUcCGCCCCU-CCUgC- -5'
8942 3' -54.7 NC_002512.2 + 149410 0.74 0.684943
Target:  5'- cGACGGGccgcGAGGGGAccgcGGCGGGGGcGGGCGc -3'
miRNA:   3'- -CUGUUC----UUUCUCU----CCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 38029 0.74 0.684943
Target:  5'- aGACAaaAGAGAGgggacgccGGAGGgGuGGGAGGGCGc -3'
miRNA:   3'- -CUGU--UCUUUC--------UCUCCgC-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 96607 0.74 0.694863
Target:  5'- gGACcGGAGcgcGGAGAcGCgGGGGAGGGCGa -3'
miRNA:   3'- -CUGuUCUU---UCUCUcCG-CCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 74674 0.74 0.694863
Target:  5'- gGACGGGAcGGAGGGaC-GGGAGGACGg -3'
miRNA:   3'- -CUGUUCUuUCUCUCcGcCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 129277 0.74 0.694863
Target:  5'- gGACcGGGAcuGGGGGGGgGGGGAGGGa- -3'
miRNA:   3'- -CUGuUCUU--UCUCUCCgCCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 156443 0.74 0.694863
Target:  5'- gGGCuGGggGGcuccGGGGGCGGcGGGGGACu -3'
miRNA:   3'- -CUGuUCuuUC----UCUCCGCC-CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229196 0.73 0.704732
Target:  5'- cGCAGGGGuGGAGAGGaagcaaGGGGAGGAa- -3'
miRNA:   3'- cUGUUCUU-UCUCUCCg-----CCCCUCCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.