miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 64285 0.69 0.904639
Target:  5'- aGACAGcGguAGGGAGGCcaguuGGGGAGcGGCu -3'
miRNA:   3'- -CUGUU-CuuUCUCUCCG-----CCCCUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 70702 0.78 0.441988
Target:  5'- gGGCGGGGGAcGGGGGGaCGGGG-GGACGg -3'
miRNA:   3'- -CUGUUCUUU-CUCUCC-GCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 74674 0.74 0.694863
Target:  5'- gGACGGGAcGGAGGGaC-GGGAGGACGg -3'
miRNA:   3'- -CUGUUCUuUCUCUCcGcCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 75037 0.73 0.733949
Target:  5'- gGACGAGGGgacgcacgacGGAG-GGCGGGGGagaccGGGCGg -3'
miRNA:   3'- -CUGUUCUU----------UCUCuCCGCCCCU-----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 75677 0.67 0.964672
Target:  5'- cGCGAGAGAcgacgauGGGGGGUGGGGGaaGACa -3'
miRNA:   3'- cUGUUCUUU-------CUCUCCGCCCCUc-CUGc -5'
8942 3' -54.7 NC_002512.2 + 76083 0.7 0.871267
Target:  5'- cGACGAGGAaccggcgaucGGAagcuGAGGCGGGGgcgccgGGGugGu -3'
miRNA:   3'- -CUGUUCUU----------UCU----CUCCGCCCC------UCCugC- -5'
8942 3' -54.7 NC_002512.2 + 77005 0.66 0.976231
Target:  5'- --aAGGAGGGAGGgugaacggacGGCgaGGGGAaGGACGa -3'
miRNA:   3'- cugUUCUUUCUCU----------CCG--CCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 78713 0.76 0.545198
Target:  5'- -cCGAGAGGGAGAGaGCGGGcGGGGCu -3'
miRNA:   3'- cuGUUCUUUCUCUC-CGCCCcUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 80688 0.7 0.871267
Target:  5'- cGACGGGGgcGAGcGGCGuccGGGGGGCGa -3'
miRNA:   3'- -CUGUUCUuuCUCuCCGCc--CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 80783 0.7 0.84873
Target:  5'- -uCGAGGAGGAGcGGCGcGaGGAGGAgGa -3'
miRNA:   3'- cuGUUCUUUCUCuCCGC-C-CCUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 81865 0.66 0.971001
Target:  5'- cGGCGGGAAGcgacAGAGGCccaGGGAGGcCGu -3'
miRNA:   3'- -CUGUUCUUUc---UCUCCGc--CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 82239 0.84 0.220748
Target:  5'- cGCGAGGAGGgaugcgaAGAGGCGGGGAGGAUc -3'
miRNA:   3'- cUGUUCUUUC-------UCUCCGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 82438 0.67 0.950471
Target:  5'- gGACGAGggGGcgucGGucccgcucccgaAGGCGGGGAagGGGCc -3'
miRNA:   3'- -CUGUUCuuUC----UC------------UCCGCCCCU--CCUGc -5'
8942 3' -54.7 NC_002512.2 + 85103 0.67 0.961684
Target:  5'- -cCAcGAGGGGGAGGuCGGGGucAGGAa- -3'
miRNA:   3'- cuGUuCUUUCUCUCC-GCCCC--UCCUgc -5'
8942 3' -54.7 NC_002512.2 + 86250 0.8 0.343152
Target:  5'- -cCGGGGGAGAgggccGAGGCGGGGAgGGACGa -3'
miRNA:   3'- cuGUUCUUUCU-----CUCCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 86432 0.7 0.878373
Target:  5'- uGACGAGc-GGAcGGGGCGcGGGAcgggGGACGg -3'
miRNA:   3'- -CUGUUCuuUCU-CUCCGC-CCCU----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 87257 0.66 0.975987
Target:  5'- uGCGAGGGgucuccGGGGAGcgaacacgcggucGUGGGGuGGACGg -3'
miRNA:   3'- cUGUUCUU------UCUCUC-------------CGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 88259 0.67 0.961684
Target:  5'- cGGCGGuGuuGGAGAGGUGGcGGcaggcgugucGGGACGc -3'
miRNA:   3'- -CUGUU-CuuUCUCUCCGCC-CC----------UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 90529 0.77 0.486725
Target:  5'- cGACGGGAAcgcggugGGGGAGGaggaGcGGGAGGACGa -3'
miRNA:   3'- -CUGUUCUU-------UCUCUCCg---C-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 93748 0.68 0.946293
Target:  5'- gGACGGGGAcggagggcucggAGGGAGG-GaGGGAGGuCGg -3'
miRNA:   3'- -CUGUUCUU------------UCUCUCCgC-CCCUCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.