miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 224146 0.7 0.871267
Target:  5'- -cCGGGAGgcGGAcgcguGAGGCGGGGcgGGGGCGc -3'
miRNA:   3'- cuGUUCUU--UCU-----CUCCGCCCC--UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 223919 0.7 0.863954
Target:  5'- gGGCGAGAGGucGAGccGGaCGGGGAGGuCGa -3'
miRNA:   3'- -CUGUUCUUU--CUCu-CC-GCCCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 223840 0.68 0.932396
Target:  5'- gGAgGGGAAGGAgGAGGCcgaGGaGGAGGcCGa -3'
miRNA:   3'- -CUgUUCUUUCU-CUCCG---CC-CCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 222300 0.66 0.978569
Target:  5'- gGACAgcuAGGAGGAGAcucagGGCGaGacaGAGGACGa -3'
miRNA:   3'- -CUGU---UCUUUCUCU-----CCGC-Cc--CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 221393 0.68 0.932396
Target:  5'- gGGCGGGGcgc--GGGCGGGGAGGcgGCGg -3'
miRNA:   3'- -CUGUUCUuucucUCCGCCCCUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 221289 0.74 0.644927
Target:  5'- --gAGGggGGGGAGGcCGGGGucGGCGg -3'
miRNA:   3'- cugUUCuuUCUCUCC-GCCCCucCUGC- -5'
8942 3' -54.7 NC_002512.2 + 220012 0.67 0.964994
Target:  5'- cGGCGGGuc-GAGAGGCcgcuccgucucGGGGuccGGGCGa -3'
miRNA:   3'- -CUGUUCuuuCUCUCCG-----------CCCCu--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 212392 0.7 0.878373
Target:  5'- -uCGAGAucGAgGAGGCGGccgacGAGGACGa -3'
miRNA:   3'- cuGUUCUuuCU-CUCCGCCc----CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 210399 0.72 0.789848
Target:  5'- cGACGcGguGGGGAacgcGGCGGGGAGG-CGa -3'
miRNA:   3'- -CUGUuCuuUCUCU----CCGCCCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 210276 0.69 0.91643
Target:  5'- --gGGGAGAGGGAGGUGGGcgGAGcgccuGACGa -3'
miRNA:   3'- cugUUCUUUCUCUCCGCCC--CUC-----CUGC- -5'
8942 3' -54.7 NC_002512.2 + 205482 0.77 0.496119
Target:  5'- gGACGAucuGGGAGAGGCGGacgacggcgucgcGGAGGACGa -3'
miRNA:   3'- -CUGUUcu-UUCUCUCCGCC-------------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 204797 0.68 0.920341
Target:  5'- aGACGcccGGGAGGuccgcgucccGGGGGCGcggcggcuccguccGGGAGGACGa -3'
miRNA:   3'- -CUGU---UCUUUC----------UCUCCGC--------------CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 204613 0.74 0.683949
Target:  5'- aGCGAGGAGGAGgacgacgacgaagGGGaCGGGGAccgGGACGg -3'
miRNA:   3'- cUGUUCUUUCUC-------------UCC-GCCCCU---CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 202511 0.72 0.753016
Target:  5'- cGGCGgcGGAGgcGGAGGcggcGGCGGGGGcGGACGa -3'
miRNA:   3'- -CUGU--UCUU--UCUCU----CCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 201777 0.72 0.789848
Target:  5'- gGACGAGGGuGAGAGcGCGGacGGGGCGg -3'
miRNA:   3'- -CUGUUCUUuCUCUC-CGCCccUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 201686 0.68 0.921983
Target:  5'- aACGAGGAGGgaccGGAGGUGGuguGGGGGAuCGa -3'
miRNA:   3'- cUGUUCUUUC----UCUCCGCC---CCUCCU-GC- -5'
8942 3' -54.7 NC_002512.2 + 200406 0.72 0.7624
Target:  5'- -cCGGGAGGGAGcAGaCGGaGGAGGACGa -3'
miRNA:   3'- cuGUUCUUUCUC-UCcGCC-CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 200352 0.77 0.525739
Target:  5'- cGGCGgacGGggGGAcGGGGCGGGGggugaGGGGCGg -3'
miRNA:   3'- -CUGU---UCuuUCU-CUCCGCCCC-----UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 200251 0.68 0.936781
Target:  5'- cGACGGGGAcGAcGAGGacgacgaCGGGGAcgaGGACGa -3'
miRNA:   3'- -CUGUUCUUuCU-CUCC-------GCCCCU---CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 199821 0.72 0.788951
Target:  5'- gGGCGGaucggguGGAGGGGGGGCGGGaGAugGGACGc -3'
miRNA:   3'- -CUGUU-------CUUUCUCUCCGCCC-CU--CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.