miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 228796 0.71 0.816063
Target:  5'- gGAgAGGAGAGGGAGGgaCGGGGA-GACc -3'
miRNA:   3'- -CUgUUCUUUCUCUCC--GCCCCUcCUGc -5'
8942 3' -54.7 NC_002512.2 + 228753 0.75 0.634879
Target:  5'- --uGAGAGAGGGAgGGCGGaGGAGG-CGa -3'
miRNA:   3'- cugUUCUUUCUCU-CCGCC-CCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 228653 1.09 0.005593
Target:  5'- gGACAAGAAAGAGAGGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCUUUCUCUCCGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228536 0.66 0.97371
Target:  5'- cGACGAGAcgacacGGGAGGCGGacGGcagccGGACGc -3'
miRNA:   3'- -CUGUUCUuu----CUCUCCGCC--CCu----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228505 0.69 0.904639
Target:  5'- gGGCGAGAGGGAc--GCGGaGGAGaGACGg -3'
miRNA:   3'- -CUGUUCUUUCUcucCGCC-CCUC-CUGC- -5'
8942 3' -54.7 NC_002512.2 + 228412 0.74 0.664987
Target:  5'- gGACGGGGcgcuGGGGGGCGGGGgcGGGaACGg -3'
miRNA:   3'- -CUGUUCUuu--CUCUCCGCCCC--UCC-UGC- -5'
8942 3' -54.7 NC_002512.2 + 228289 0.77 0.525739
Target:  5'- gGAgAGGGAGGAcgggacccGGGGCGGGG-GGACGa -3'
miRNA:   3'- -CUgUUCUUUCU--------CUCCGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228222 0.66 0.97371
Target:  5'- aGGCcGGGc-GAGAcGGCGGGaAGGGCGa -3'
miRNA:   3'- -CUGuUCUuuCUCU-CCGCCCcUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228181 0.72 0.789848
Target:  5'- gGGgAAGAAggacaGGAGAaGCGGGGAcGGGCGg -3'
miRNA:   3'- -CUgUUCUU-----UCUCUcCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 227944 0.71 0.840831
Target:  5'- gGACGAGGcGGGGGAGcGCGGGGgagccggagaggAGGGCc -3'
miRNA:   3'- -CUGUUCU-UUCUCUC-CGCCCC------------UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 227930 0.79 0.389709
Target:  5'- aGACAgcacagugggaacGGGAAGGGAGGUGGGGAccgaaagcggauGGACGg -3'
miRNA:   3'- -CUGU-------------UCUUUCUCUCCGCCCCU------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 227516 0.72 0.789848
Target:  5'- -cCGGGggGGAGAguccGGCGGcggacggggggaGGAGGGCGg -3'
miRNA:   3'- cuGUUCuuUCUCU----CCGCC------------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 227464 0.68 0.921983
Target:  5'- ----cGggGGAGAGGcCGGGGGcGGcCGg -3'
miRNA:   3'- cuguuCuuUCUCUCC-GCCCCU-CCuGC- -5'
8942 3' -54.7 NC_002512.2 + 227224 0.69 0.904639
Target:  5'- aGGCGgcGGAccGGGAGGCGcGGcGGACGg -3'
miRNA:   3'- -CUGU--UCUuuCUCUCCGCcCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 226997 0.67 0.963033
Target:  5'- aGC-AGAGGGuGAGGCGGcGcgagcuggagaaacuGAGGACGg -3'
miRNA:   3'- cUGuUCUUUCuCUCCGCC-C---------------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 226588 0.66 0.97371
Target:  5'- -cCAGGAGGGcGcGGCccgGGGGAGGAgGg -3'
miRNA:   3'- cuGUUCUUUCuCuCCG---CCCCUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 226471 0.67 0.954427
Target:  5'- aGGCGGGA---GGAGGcCGGGGcccGGGCGc -3'
miRNA:   3'- -CUGUUCUuucUCUCC-GCCCCu--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 226428 0.75 0.634879
Target:  5'- uGGCGAGAAAGgaugaGGGGGCGGcGAGGaACGg -3'
miRNA:   3'- -CUGUUCUUUC-----UCUCCGCCcCUCC-UGC- -5'
8942 3' -54.7 NC_002512.2 + 226239 0.67 0.958163
Target:  5'- cGCGAGggGGccGGAGGaGGaGGAGGAg- -3'
miRNA:   3'- cUGUUCuuUC--UCUCCgCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 225532 0.7 0.85644
Target:  5'- gGACGGGAcGGcGGGaGCGcGGAGGACGa -3'
miRNA:   3'- -CUGUUCUuUCuCUC-CGCcCCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.