miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 229674 0.68 0.921983
Target:  5'- aGGgGAGAGAGAGcGGCGcgacGGGGGGCc -3'
miRNA:   3'- -CUgUUCUUUCUCuCCGCc---CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229595 0.74 0.652959
Target:  5'- gGGCGAGAaggggcccgggcgGAGAGGGaGCGGGGAccgaagggcaggcGGGCGg -3'
miRNA:   3'- -CUGUUCU-------------UUCUCUC-CGCCCCU-------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229566 0.69 0.898404
Target:  5'- cGGCAGGAGgcGGcAGAGGaGGccGGAGGGCGu -3'
miRNA:   3'- -CUGUUCUU--UC-UCUCCgCC--CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229533 0.73 0.714542
Target:  5'- aGAgGAGGGAGAgGAGGCGGucggcGGAGGAgGc -3'
miRNA:   3'- -CUgUUCUUUCU-CUCCGCC-----CCUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 229499 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 229483 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229470 0.77 0.516107
Target:  5'- --gGAGGAGGGGAagGGgGGGGAGGugGa -3'
miRNA:   3'- cugUUCUUUCUCU--CCgCCCCUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 229415 0.69 0.91472
Target:  5'- cGCAcccGGGAGGAGAGG-GGGGAaaaaagcgcaagcgGGAUGa -3'
miRNA:   3'- cUGU---UCUUUCUCUCCgCCCCU--------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229372 0.84 0.210854
Target:  5'- aGCGAGGGAGGGAGGCGGGuGAGaGGCa -3'
miRNA:   3'- cUGUUCUUUCUCUCCGCCC-CUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 229365 0.72 0.798734
Target:  5'- gGGgAAGGAAGuGGGGCGGGaGGGGGu- -3'
miRNA:   3'- -CUgUUCUUUCuCUCCGCCC-CUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229310 0.7 0.85644
Target:  5'- aGGCGGGGGAGcgggaggaaaGGAGGagaGGGGAGGGa- -3'
miRNA:   3'- -CUGUUCUUUC----------UCUCCg--CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229294 0.68 0.936781
Target:  5'- aGACAgauguucGGAGAG-GAGGCaGGaGGAGGAa- -3'
miRNA:   3'- -CUGU-------UCUUUCuCUCCG-CC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229212 0.71 0.832749
Target:  5'- aGAgcGGAGAGAGGGGUgcggaacgaagaGGGGAGGAg- -3'
miRNA:   3'- -CUguUCUUUCUCUCCG------------CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229196 0.73 0.704732
Target:  5'- cGCAGGGGuGGAGAGGaagcaaGGGGAGGAa- -3'
miRNA:   3'- cUGUUCUU-UCUCUCCg-----CCCCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 229152 0.7 0.84873
Target:  5'- aACGGGGGAGAG-GGaGGGGAGaGGCa -3'
miRNA:   3'- cUGUUCUUUCUCuCCgCCCCUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 229063 0.77 0.525739
Target:  5'- gGAgGGGAAGGAGAGGgGGGaaacaGAGGugGa -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCCC-----CUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 229048 0.68 0.932396
Target:  5'- aGGCAGGAgGAGGGAGGagaGaGGaGAGGAgGa -3'
miRNA:   3'- -CUGUUCU-UUCUCUCCg--C-CC-CUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 228950 0.81 0.328307
Target:  5'- aGGCGAGGAgaGGAGAGG-GGcGGAGGGCGg -3'
miRNA:   3'- -CUGUUCUU--UCUCUCCgCC-CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228931 0.72 0.771672
Target:  5'- cGAgAAGAGAGAcagacgGAGGgGGGGAGacGGCGg -3'
miRNA:   3'- -CUgUUCUUUCU------CUCCgCCCCUC--CUGC- -5'
8942 3' -54.7 NC_002512.2 + 228898 0.68 0.932396
Target:  5'- cGGCAGGGAGGAGGacgacGCGaGaGAGGACGa -3'
miRNA:   3'- -CUGUUCUUUCUCUc----CGCcC-CUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.