miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 11 0.69 0.91472
Target:  5'- cGCAcccGGGAGGAGAGG-GGGGAaaaaagcgcaagcgGGAUGa -3'
miRNA:   3'- cUGU---UCUUUCUCUCCgCCCCU--------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 66 0.77 0.516107
Target:  5'- --gGAGGAGGGGAagGGgGGGGAGGugGa -3'
miRNA:   3'- cugUUCUUUCUCU--CCgCCCCUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 79 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 95 0.68 0.921983
Target:  5'- -uCAAGAAAGGGcGGGUGGGcgGAGGcgGCGg -3'
miRNA:   3'- cuGUUCUUUCUC-UCCGCCC--CUCC--UGC- -5'
8942 3' -54.7 NC_002512.2 + 115 0.69 0.910649
Target:  5'- cGGCAGGAGgcggcAGAgGAGGCGaGaGGAGG-CGg -3'
miRNA:   3'- -CUGUUCUU-----UCU-CUCCGC-C-CCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 151 0.71 0.840831
Target:  5'- cGGCgGAGGAGGcggcaGGAGGCGGcagaggaggccGGAGGGCGu -3'
miRNA:   3'- -CUG-UUCUUUC-----UCUCCGCC-----------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 192 0.74 0.652959
Target:  5'- gGGCGAGAaggggcccgggcgGAGAGGGaGCGGGGAccgaagggcaggcGGGCGg -3'
miRNA:   3'- -CUGUUCU-------------UUCUCUC-CGCCCCU-------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 271 0.68 0.921983
Target:  5'- aGGgGAGAGAGAGcGGCGcgacGGGGGGCc -3'
miRNA:   3'- -CUgUUCUUUCUCuCCGCc---CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 2068 0.66 0.971001
Target:  5'- aGCGGGAGcgcGGAGuccacgccGGGCGGGaGcGGGCGg -3'
miRNA:   3'- cUGUUCUU---UCUC--------UCCGCCC-CuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 4525 0.66 0.976231
Target:  5'- gGugGAGGAGGAGAagcGGCGacGGuGAGG-CGg -3'
miRNA:   3'- -CugUUCUUUCUCU---CCGC--CC-CUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 6398 0.66 0.968098
Target:  5'- cGACGGGc-AGGGAGGCggcggcggcgcuGGGGAaGGCGg -3'
miRNA:   3'- -CUGUUCuuUCUCUCCG------------CCCCUcCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11454 0.68 0.927305
Target:  5'- gGACGGGGgccgGGGaAGGGGCGGagaccgcGAGGACGa -3'
miRNA:   3'- -CUGUUCU----UUC-UCUCCGCCc------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11556 0.75 0.624828
Target:  5'- gGACGAGGAGGAcGAGGgcuaCGGGGAGcACGa -3'
miRNA:   3'- -CUGUUCUUUCU-CUCC----GCCCCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 12889 0.67 0.961684
Target:  5'- cGCGGGAGAacGAGAGGCGGgcgcagcacauGGAGuGCGc -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-----------CCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 13759 0.75 0.624828
Target:  5'- aGCGGGAAGGAGAGGaGGGaGAGGGa- -3'
miRNA:   3'- cUGUUCUUUCUCUCCgCCC-CUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 13803 0.74 0.644927
Target:  5'- gGAgAAGAAGGAGAGGaGGaGGAGGAg- -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 13982 0.77 0.497063
Target:  5'- cACGGGGAAGGGGGaCGGGG-GGACGa -3'
miRNA:   3'- cUGUUCUUUCUCUCcGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 15202 0.73 0.724284
Target:  5'- aAUAGGGGAGAGA-GC-GGGAGGGCGg -3'
miRNA:   3'- cUGUUCUUUCUCUcCGcCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 15293 0.75 0.623823
Target:  5'- gGGCugcAGGAAGAGcgucucgucgcccAGGCGGGaGGGGACGa -3'
miRNA:   3'- -CUGu--UCUUUCUC-------------UCCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 15790 0.7 0.870545
Target:  5'- aGAUGGuGAAGGAGAGGCGGuagaGGccgccguGGGACGa -3'
miRNA:   3'- -CUGUU-CUUUCUCUCCGCC----CC-------UCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.