miRNA display CGI


Results 21 - 40 of 213 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 17024 0.69 0.910649
Target:  5'- ----cGGAGGAGGGGacgcucggaGGGGAcGGACGg -3'
miRNA:   3'- cuguuCUUUCUCUCCg--------CCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 18835 0.7 0.85644
Target:  5'- gGACGAGcGAGcGGAGGUaGcGGGGGACGg -3'
miRNA:   3'- -CUGUUCuUUC-UCUCCGcC-CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 20888 0.68 0.941889
Target:  5'- cGACGAcGggGGaAGAGGCGc-GAGGACa -3'
miRNA:   3'- -CUGUU-CuuUC-UCUCCGCccCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 21244 0.7 0.878373
Target:  5'- aGACGGGGgcgGAGAGGGcuggaGCGGGagcgGGGGACGa -3'
miRNA:   3'- -CUGUUCU---UUCUCUC-----CGCCC----CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 22335 0.72 0.798734
Target:  5'- cGCGAGGgacgcGAGGGAGGagucgcaGcGGGAGGACGc -3'
miRNA:   3'- cUGUUCU-----UUCUCUCCg------C-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 25556 0.66 0.976231
Target:  5'- cACAGGuacauGAGGCGGuuGAGGGCGa -3'
miRNA:   3'- cUGUUCuuucuCUCCGCCc-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 29266 0.72 0.789848
Target:  5'- gGACGAGGAGGAcgaaGAGGa--GGAGGACGa -3'
miRNA:   3'- -CUGUUCUUUCU----CUCCgccCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 29557 0.66 0.978569
Target:  5'- cGACAGG-AGGAcgccGGCGGGaagccgcuccccGAGGGCGg -3'
miRNA:   3'- -CUGUUCuUUCUcu--CCGCCC------------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 34917 0.67 0.964994
Target:  5'- aGAgGAGGAcGAGAcgacGGCGGGGucgcGGcGACGg -3'
miRNA:   3'- -CUgUUCUUuCUCU----CCGCCCC----UC-CUGC- -5'
8942 3' -54.7 NC_002512.2 + 38029 0.74 0.684943
Target:  5'- aGACAaaAGAGAGgggacgccGGAGGgGuGGGAGGGCGc -3'
miRNA:   3'- -CUGU--UCUUUC--------UCUCCgC-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 40869 0.68 0.937257
Target:  5'- aGACAcGGAGGGGAGggucgcccGCGGaaGAGGACGa -3'
miRNA:   3'- -CUGUuCUUUCUCUC--------CGCCc-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 42300 0.79 0.390533
Target:  5'- uACGGGAcAGAGGGaGCGGGGGGGAUc -3'
miRNA:   3'- cUGUUCUuUCUCUC-CGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 42583 0.69 0.910649
Target:  5'- cGCGAGGc-GAGcGGCGGGGcGGACc -3'
miRNA:   3'- cUGUUCUuuCUCuCCGCCCCuCCUGc -5'
8942 3' -54.7 NC_002512.2 + 44423 0.67 0.954427
Target:  5'- cGGCAGGAccacggcgaAGGAGcagaGGGCGGacAGGACGg -3'
miRNA:   3'- -CUGUUCU---------UUCUC----UCCGCCccUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 49417 0.7 0.885267
Target:  5'- gGACAgcAGAAAGAaaccacaucccaGGGGCGGGGugaaaguGGGCu -3'
miRNA:   3'- -CUGU--UCUUUCU------------CUCCGCCCCu------CCUGc -5'
8942 3' -54.7 NC_002512.2 + 49554 0.66 0.978569
Target:  5'- aGACGAGGGAGA-AGGCGcagcGGGAccuGACGa -3'
miRNA:   3'- -CUGUUCUUUCUcUCCGC----CCCUc--CUGC- -5'
8942 3' -54.7 NC_002512.2 + 53832 0.72 0.788951
Target:  5'- uACAAGAGAGAcccgGGGGCGGcgccgggaggagaGGGGGACc -3'
miRNA:   3'- cUGUUCUUUCU----CUCCGCC-------------CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 55647 0.69 0.91643
Target:  5'- gGGCgAGGGAGGAGAGGacgacucgacgcCGGGcGGGGCGc -3'
miRNA:   3'- -CUG-UUCUUUCUCUCC------------GCCCcUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 57940 0.66 0.976231
Target:  5'- aGCGGGAGAuAGAcgggcgcggcgcGGCGGGcgaaGAGGGCGa -3'
miRNA:   3'- cUGUUCUUUcUCU------------CCGCCC----CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 63466 0.66 0.971001
Target:  5'- cGGCGGGGAAGAG-GGCaGGcucGGcAGGACc -3'
miRNA:   3'- -CUGUUCUUUCUCuCCG-CC---CC-UCCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.