miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 228653 1.09 0.005593
Target:  5'- gGACAAGAAAGAGAGGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCUUUCUCUCCGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 121838 0.95 0.048671
Target:  5'- gGACGGGggGGAGGacGGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCuuUCUCU--CCGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 140997 0.9 0.094064
Target:  5'- gGGCAcGggGGGGAGcGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUuCuuUCUCUC-CGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229372 0.84 0.210854
Target:  5'- aGCGAGGGAGGGAGGCGGGuGAGaGGCa -3'
miRNA:   3'- cUGUUCUUUCUCUCCGCCC-CUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 82239 0.84 0.220748
Target:  5'- cGCGAGGAGGgaugcgaAGAGGCGGGGAGGAUc -3'
miRNA:   3'- cUGUUCUUUC-------UCUCCGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 191255 0.84 0.226656
Target:  5'- gGACAGGuAGAGAG-GGCGGGGAGG-CGg -3'
miRNA:   3'- -CUGUUC-UUUCUCuCCGCCCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 149546 0.83 0.255211
Target:  5'- gGACAGGGAAGAG-GGCGaGGAGGACa -3'
miRNA:   3'- -CUGUUCUUUCUCuCCGCcCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 148464 0.82 0.293294
Target:  5'- cGCGGGAcGGAGccgcgacGGCGGGGAGGACGa -3'
miRNA:   3'- cUGUUCUuUCUCu------CCGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228950 0.81 0.328307
Target:  5'- aGGCGAGGAgaGGAGAGG-GGcGGAGGGCGg -3'
miRNA:   3'- -CUGUUCUU--UCUCUCCgCC-CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 86250 0.8 0.343152
Target:  5'- -cCGGGGGAGAgggccGAGGCGGGGAgGGACGa -3'
miRNA:   3'- cuGUUCUUUCU-----CUCCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 227930 0.79 0.389709
Target:  5'- aGACAgcacagugggaacGGGAAGGGAGGUGGGGAccgaaagcggauGGACGg -3'
miRNA:   3'- -CUGU-------------UCUUUCUCUCCGCCCCU------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 42300 0.79 0.390533
Target:  5'- uACGGGAcAGAGGGaGCGGGGGGGAUc -3'
miRNA:   3'- cUGUUCUuUCUCUC-CGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 109006 0.79 0.398835
Target:  5'- gGAgGAGAGGgaccucGAGGGGCGGGcGGGGACGa -3'
miRNA:   3'- -CUgUUCUUU------CUCUCCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 70702 0.78 0.441988
Target:  5'- gGGCGGGGGAcGGGGGGaCGGGG-GGACGg -3'
miRNA:   3'- -CUGUUCUUU-CUCUCC-GCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 191282 0.78 0.450932
Target:  5'- cGACGGGGAGG-GcGGCGGGGcggGGGACGg -3'
miRNA:   3'- -CUGUUCUUUCuCuCCGCCCC---UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 160670 0.78 0.469112
Target:  5'- cGACGGGGAuucGGGGGGGacuuCGGGGGGGACu -3'
miRNA:   3'- -CUGUUCUU---UCUCUCC----GCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 90529 0.77 0.486725
Target:  5'- cGACGGGAAcgcggugGGGGAGGaggaGcGGGAGGACGa -3'
miRNA:   3'- -CUGUUCUU-------UCUCUCCg---C-CCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 118128 0.77 0.48766
Target:  5'- uGACGGGGGAG-GGGGCGGGGGcGGAa- -3'
miRNA:   3'- -CUGUUCUUUCuCUCCGCCCCU-CCUgc -5'
8942 3' -54.7 NC_002512.2 + 205482 0.77 0.496119
Target:  5'- gGACGAucuGGGAGAGGCGGacgacggcgucgcGGAGGACGa -3'
miRNA:   3'- -CUGUUcu-UUCUCUCCGCC-------------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 13982 0.77 0.497063
Target:  5'- cACGGGGAAGGGGGaCGGGG-GGACGa -3'
miRNA:   3'- cUGUUCUUUCUCUCcGCCCCuCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.