miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 140997 0.9 0.094064
Target:  5'- gGGCAcGggGGGGAGcGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUuCuuUCUCUC-CGCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 131877 0.75 0.634879
Target:  5'- aGACGGGGAgccGGAGGGGgagaGGGGGGGuCGg -3'
miRNA:   3'- -CUGUUCUU---UCUCUCCg---CCCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 101531 0.75 0.624828
Target:  5'- gGGCGagggGGAAGGAGAcGGCGGcGGcgGGGACGg -3'
miRNA:   3'- -CUGU----UCUUUCUCU-CCGCC-CC--UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 11556 0.75 0.624828
Target:  5'- gGACGAGGAGGAcGAGGgcuaCGGGGAGcACGa -3'
miRNA:   3'- -CUGUUCUUUCU-CUCC----GCCCCUCcUGC- -5'
8942 3' -54.7 NC_002512.2 + 13759 0.75 0.624828
Target:  5'- aGCGGGAAGGAGAGGaGGGaGAGGGa- -3'
miRNA:   3'- cUGUUCUUUCUCUCCgCCC-CUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 15293 0.75 0.623823
Target:  5'- gGGCugcAGGAAGAGcgucucgucgcccAGGCGGGaGGGGACGa -3'
miRNA:   3'- -CUGu--UCUUUCUC-------------UCCGCCC-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229483 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 79 0.76 0.555016
Target:  5'- cGCGAGGAGgcGAGAGGCGGcGGGGGGa- -3'
miRNA:   3'- cUGUUCUUU--CUCUCCGCC-CCUCCUgc -5'
8942 3' -54.7 NC_002512.2 + 129843 0.76 0.555016
Target:  5'- cGCGAuGGAGGcGGAGGCGGaggcGGAGGACGg -3'
miRNA:   3'- cUGUU-CUUUC-UCUCCGCC----CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 108386 0.76 0.555016
Target:  5'- gGGCGGGggGcgagcccgguGGGuGGgGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCuuU----------CUCuCCgCCCCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 78713 0.76 0.545198
Target:  5'- -cCGAGAGGGAGAGaGCGGGcGGGGCu -3'
miRNA:   3'- cuGUUCUUUCUCUC-CGCCCcUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 229063 0.77 0.525739
Target:  5'- gGAgGGGAAGGAGAGGgGGGaaacaGAGGugGa -3'
miRNA:   3'- -CUgUUCUUUCUCUCCgCCC-----CUCCugC- -5'
8942 3' -54.7 NC_002512.2 + 13982 0.77 0.497063
Target:  5'- cACGGGGAAGGGGGaCGGGG-GGACGa -3'
miRNA:   3'- cUGUUCUUUCUCUCcGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 118128 0.77 0.48766
Target:  5'- uGACGGGGGAG-GGGGCGGGGGcGGAa- -3'
miRNA:   3'- -CUGUUCUUUCuCUCCGCCCCU-CCUgc -5'
8942 3' -54.7 NC_002512.2 + 70702 0.78 0.441988
Target:  5'- gGGCGGGGGAcGGGGGGaCGGGG-GGACGg -3'
miRNA:   3'- -CUGUUCUUU-CUCUCC-GCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 42300 0.79 0.390533
Target:  5'- uACGGGAcAGAGGGaGCGGGGGGGAUc -3'
miRNA:   3'- cUGUUCUuUCUCUC-CGCCCCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 227930 0.79 0.389709
Target:  5'- aGACAgcacagugggaacGGGAAGGGAGGUGGGGAccgaaagcggauGGACGg -3'
miRNA:   3'- -CUGU-------------UCUUUCUCUCCGCCCCU------------CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 86250 0.8 0.343152
Target:  5'- -cCGGGGGAGAgggccGAGGCGGGGAgGGACGa -3'
miRNA:   3'- cuGUUCUUUCU-----CUCCGCCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 229372 0.84 0.210854
Target:  5'- aGCGAGGGAGGGAGGCGGGuGAGaGGCa -3'
miRNA:   3'- cUGUUCUUUCUCUCCGCCC-CUC-CUGc -5'
8942 3' -54.7 NC_002512.2 + 121838 0.95 0.048671
Target:  5'- gGACGGGggGGAGGacGGCGGGGAGGACGg -3'
miRNA:   3'- -CUGUUCuuUCUCU--CCGCCCCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.