miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 5' -52.5 NC_002512.2 + 228687 1.14 0.004882
Target:  5'- gGCCGCCUUCCUCUCUUUCUCUCGUGCu -3'
miRNA:   3'- -CGGCGGAAGGAGAGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 49902 0.78 0.575234
Target:  5'- uCCGCCUUCCUCUgUguacaUCUCGUcGCa -3'
miRNA:   3'- cGGCGGAAGGAGAgAaag--AGAGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 104000 0.77 0.656275
Target:  5'- uGUCGgucuaCCUUUUUCUCUUUCUUUCGUGUa -3'
miRNA:   3'- -CGGC-----GGAAGGAGAGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 2003 0.74 0.783288
Target:  5'- cGUCGUgUUUCUCUCUUUCgUCUCuGUGUu -3'
miRNA:   3'- -CGGCGgAAGGAGAGAAAG-AGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 92282 0.72 0.866758
Target:  5'- cGCCGCCUcucguguuccguUUUUCUCUUUgUCgUGUGCu -3'
miRNA:   3'- -CGGCGGA------------AGGAGAGAAAgAGaGCACG- -5'
8942 5' -52.5 NC_002512.2 + 3023 0.72 0.87407
Target:  5'- gGCCGCUUcUCC-CUCUUUCcgCUCGUucGCc -3'
miRNA:   3'- -CGGCGGA-AGGaGAGAAAGa-GAGCA--CG- -5'
8942 5' -52.5 NC_002512.2 + 6691 0.72 0.894707
Target:  5'- gGCCGUCUguUCCaucUCUCUgaugCUCUcCGUGUa -3'
miRNA:   3'- -CGGCGGA--AGG---AGAGAaa--GAGA-GCACG- -5'
8942 5' -52.5 NC_002512.2 + 189586 0.72 0.895361
Target:  5'- gGCCGCCgggUCCUCgggacgacgUUCGUGCg -3'
miRNA:   3'- -CGGCGGa--AGGAGagaaaga--GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 173800 0.71 0.907342
Target:  5'- gGCCGCCUUCCagCUCgaUCUgUUGcggaUGCu -3'
miRNA:   3'- -CGGCGGAAGGa-GAGaaAGAgAGC----ACG- -5'
8942 5' -52.5 NC_002512.2 + 89312 0.71 0.919051
Target:  5'- uCCGCCcUCCgUCUCgaccaggUCggagagCUCGUGCa -3'
miRNA:   3'- cGGCGGaAGG-AGAGaa-----AGa-----GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 106988 0.7 0.934852
Target:  5'- uGCCGUCgUCCUCgucgUCUccCUCUCGguagGCg -3'
miRNA:   3'- -CGGCGGaAGGAG----AGAaaGAGAGCa---CG- -5'
8942 5' -52.5 NC_002512.2 + 188215 0.7 0.939649
Target:  5'- cUCGCUUUCCUCgcccaggUCUCUCGaccgUGCg -3'
miRNA:   3'- cGGCGGAAGGAGagaa---AGAGAGC----ACG- -5'
8942 5' -52.5 NC_002512.2 + 2112 0.7 0.944211
Target:  5'- gGCCGUCcUCCUCUCUucUUCUCUa---- -3'
miRNA:   3'- -CGGCGGaAGGAGAGA--AAGAGAgcacg -5'
8942 5' -52.5 NC_002512.2 + 219904 0.7 0.944211
Target:  5'- aCCGCCcUCCUCUCg---UCUCGUcGUc -3'
miRNA:   3'- cGGCGGaAGGAGAGaaagAGAGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 229742 0.69 0.961577
Target:  5'- uGCCGCCUccuccgccgaccgccUCCUCUCgccUC-CUC-UGCc -3'
miRNA:   3'- -CGGCGGA---------------AGGAGAGaa-AGaGAGcACG- -5'
8942 5' -52.5 NC_002512.2 + 339 0.69 0.961577
Target:  5'- uGCCGCCUccuccgccgaccgccUCCUCUCgccUC-CUC-UGCc -3'
miRNA:   3'- -CGGCGGA---------------AGGAGAGaa-AGaGAGcACG- -5'
8942 5' -52.5 NC_002512.2 + 150653 0.69 0.963614
Target:  5'- gGCgGCCgacggCCUCUCgUUCUCUUGg-- -3'
miRNA:   3'- -CGgCGGaa---GGAGAGaAAGAGAGCacg -5'
8942 5' -52.5 NC_002512.2 + 15996 0.68 0.975291
Target:  5'- uGCCGaUUUCaaC-CUUUCUCUUGUGCg -3'
miRNA:   3'- -CGGCgGAAGgaGaGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 113402 0.68 0.979975
Target:  5'- cGCgCGCUcUCC-CUCUUgCUCUUgGUGCa -3'
miRNA:   3'- -CG-GCGGaAGGaGAGAAaGAGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 114172 0.68 0.982052
Target:  5'- gGCCGCC-UCCgacagcuugaUCUUgUUCUCcacCGUGCu -3'
miRNA:   3'- -CGGCGGaAGG----------AGAGaAAGAGa--GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.