miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 5' -52.5 NC_002512.2 + 339 0.69 0.961577
Target:  5'- uGCCGCCUccuccgccgaccgccUCCUCUCgccUC-CUC-UGCc -3'
miRNA:   3'- -CGGCGGA---------------AGGAGAGaa-AGaGAGcACG- -5'
8942 5' -52.5 NC_002512.2 + 867 0.67 0.991303
Target:  5'- uCCGCCgUCCgCUCUccUCUCUCGc-- -3'
miRNA:   3'- cGGCGGaAGGaGAGAa-AGAGAGCacg -5'
8942 5' -52.5 NC_002512.2 + 960 0.67 0.991303
Target:  5'- uCCGUCUgUCUCUCUUcucgucguccUCUCUCGcGUc -3'
miRNA:   3'- cGGCGGAaGGAGAGAA----------AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 2003 0.74 0.783288
Target:  5'- cGUCGUgUUUCUCUCUUUCgUCUCuGUGUu -3'
miRNA:   3'- -CGGCGgAAGGAGAGAAAG-AGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 2112 0.7 0.944211
Target:  5'- gGCCGUCcUCCUCUCUucUUCUCUa---- -3'
miRNA:   3'- -CGGCGGaAGGAGAGA--AAGAGAgcacg -5'
8942 5' -52.5 NC_002512.2 + 3023 0.72 0.87407
Target:  5'- gGCCGCUUcUCC-CUCUUUCcgCUCGUucGCc -3'
miRNA:   3'- -CGGCGGA-AGGaGAGAAAGa-GAGCA--CG- -5'
8942 5' -52.5 NC_002512.2 + 3457 0.66 0.994228
Target:  5'- cGCCGCCcccucaUCCUUUCUcgccaUCUCcaUCGUcGCc -3'
miRNA:   3'- -CGGCGGa-----AGGAGAGAa----AGAG--AGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 6691 0.72 0.894707
Target:  5'- gGCCGUCUguUCCaucUCUCUgaugCUCUcCGUGUa -3'
miRNA:   3'- -CGGCGGA--AGG---AGAGAaa--GAGA-GCACG- -5'
8942 5' -52.5 NC_002512.2 + 6817 0.66 0.995003
Target:  5'- aCCGCCUucUCCgagcggCUCUUUCU-UCGUa- -3'
miRNA:   3'- cGGCGGA--AGGa-----GAGAAAGAgAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 15996 0.68 0.975291
Target:  5'- uGCCGaUUUCaaC-CUUUCUCUUGUGCg -3'
miRNA:   3'- -CGGCgGAAGgaGaGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 17499 0.66 0.995003
Target:  5'- gGCCGCC-UCCUCga--UCUCgacgUCG-GCg -3'
miRNA:   3'- -CGGCGGaAGGAGagaaAGAG----AGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 39982 0.66 0.993357
Target:  5'- aGCCGCCgUCCUCgccgCcgUC-CUCGccGCc -3'
miRNA:   3'- -CGGCGGaAGGAGa---GaaAGaGAGCa-CG- -5'
8942 5' -52.5 NC_002512.2 + 49902 0.78 0.575234
Target:  5'- uCCGCCUUCCUCUgUguacaUCUCGUcGCa -3'
miRNA:   3'- cGGCGGAAGGAGAgAaag--AGAGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 74517 0.67 0.991303
Target:  5'- cGCCGCCgccCCgacCUCgagCgccgCUCGUGUu -3'
miRNA:   3'- -CGGCGGaa-GGa--GAGaaaGa---GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 83342 0.67 0.985715
Target:  5'- -aCGUCUUCCUCUCcgcaugCUCGgucgGCg -3'
miRNA:   3'- cgGCGGAAGGAGAGaaaga-GAGCa---CG- -5'
8942 5' -52.5 NC_002512.2 + 89312 0.71 0.919051
Target:  5'- uCCGCCcUCCgUCUCgaccaggUCggagagCUCGUGCa -3'
miRNA:   3'- cGGCGGaAGG-AGAGaa-----AGa-----GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 92282 0.72 0.866758
Target:  5'- cGCCGCCUcucguguuccguUUUUCUCUUUgUCgUGUGCu -3'
miRNA:   3'- -CGGCGGA------------AGGAGAGAAAgAGaGCACG- -5'
8942 5' -52.5 NC_002512.2 + 104000 0.77 0.656275
Target:  5'- uGUCGgucuaCCUUUUUCUCUUUCUUUCGUGUa -3'
miRNA:   3'- -CGGC-----GGAAGGAGAGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 104958 0.67 0.985715
Target:  5'- cGgCGCCggCCUCgug-UCUCUCGUa- -3'
miRNA:   3'- -CgGCGGaaGGAGagaaAGAGAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 106988 0.7 0.934852
Target:  5'- uGCCGUCgUCCUCgucgUCUccCUCUCGguagGCg -3'
miRNA:   3'- -CGGCGGaAGGAG----AGAaaGAGAGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.