miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 5' -52.5 NC_002512.2 + 229742 0.69 0.961577
Target:  5'- uGCCGCCUccuccgccgaccgccUCCUCUCgccUC-CUC-UGCc -3'
miRNA:   3'- -CGGCGGA---------------AGGAGAGaa-AGaGAGcACG- -5'
8942 5' -52.5 NC_002512.2 + 228687 1.14 0.004882
Target:  5'- gGCCGCCUUCCUCUCUUUCUCUCGUGCu -3'
miRNA:   3'- -CGGCGGAAGGAGAGAAAGAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 222370 0.67 0.988778
Target:  5'- gGCCGCCUUCCccggcgggCUCUggCUcCUCaUGg -3'
miRNA:   3'- -CGGCGGAAGGa-------GAGAaaGA-GAGcACg -5'
8942 5' -52.5 NC_002512.2 + 219904 0.7 0.944211
Target:  5'- aCCGCCcUCCUCUCg---UCUCGUcGUc -3'
miRNA:   3'- cGGCGGaAGGAGAGaaagAGAGCA-CG- -5'
8942 5' -52.5 NC_002512.2 + 198524 0.66 0.995693
Target:  5'- gGUCGCCUUCgaUCUCcag--CUCGUGg -3'
miRNA:   3'- -CGGCGGAAGg-AGAGaaagaGAGCACg -5'
8942 5' -52.5 NC_002512.2 + 191857 0.66 0.995693
Target:  5'- uCCGgCguccCCUCUCUUUUgUCUCGcGCa -3'
miRNA:   3'- cGGCgGaa--GGAGAGAAAG-AGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 189586 0.72 0.895361
Target:  5'- gGCCGCCgggUCCUCgggacgacgUUCGUGCg -3'
miRNA:   3'- -CGGCGGa--AGGAGagaaaga--GAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 188215 0.7 0.939649
Target:  5'- cUCGCUUUCCUCgcccaggUCUCUCGaccgUGCg -3'
miRNA:   3'- cGGCGGAAGGAGagaa---AGAGAGC----ACG- -5'
8942 5' -52.5 NC_002512.2 + 180629 0.66 0.992385
Target:  5'- uCCGCgaUCCgCUC-UUCUCUaggGUGCg -3'
miRNA:   3'- cGGCGgaAGGaGAGaAAGAGAg--CACG- -5'
8942 5' -52.5 NC_002512.2 + 177441 0.66 0.992385
Target:  5'- uCCGCCUUCUUUUUcaUCUcCUCGUa- -3'
miRNA:   3'- cGGCGGAAGGAGAGaaAGA-GAGCAcg -5'
8942 5' -52.5 NC_002512.2 + 173800 0.71 0.907342
Target:  5'- gGCCGCCUUCCagCUCgaUCUgUUGcggaUGCu -3'
miRNA:   3'- -CGGCGGAAGGa-GAGaaAGAgAGC----ACG- -5'
8942 5' -52.5 NC_002512.2 + 167640 0.66 0.993357
Target:  5'- cGUCGCCcagcucgUCCUCUCgucgucCUCUCGcaggacGCg -3'
miRNA:   3'- -CGGCGGa------AGGAGAGaaa---GAGAGCa-----CG- -5'
8942 5' -52.5 NC_002512.2 + 150653 0.69 0.963614
Target:  5'- gGCgGCCgacggCCUCUCgUUCUCUUGg-- -3'
miRNA:   3'- -CGgCGGaa---GGAGAGaAAGAGAGCacg -5'
8942 5' -52.5 NC_002512.2 + 143460 0.66 0.995693
Target:  5'- -gCGCCccgUCCgCUCgucaUCUCUCG-GCg -3'
miRNA:   3'- cgGCGGa--AGGaGAGaa--AGAGAGCaCG- -5'
8942 5' -52.5 NC_002512.2 + 129367 0.66 0.995003
Target:  5'- cGUCGCCUUCUg-------UCUCGUGCg -3'
miRNA:   3'- -CGGCGGAAGGagagaaagAGAGCACG- -5'
8942 5' -52.5 NC_002512.2 + 122495 0.67 0.987318
Target:  5'- cGCCgGCCUgaaCCUCUCgg--UCUCGgucugGCu -3'
miRNA:   3'- -CGG-CGGAa--GGAGAGaaagAGAGCa----CG- -5'
8942 5' -52.5 NC_002512.2 + 114172 0.68 0.982052
Target:  5'- gGCCGCC-UCCgacagcuugaUCUUgUUCUCcacCGUGCu -3'
miRNA:   3'- -CGGCGGaAGG----------AGAGaAAGAGa--GCACG- -5'
8942 5' -52.5 NC_002512.2 + 113402 0.68 0.979975
Target:  5'- cGCgCGCUcUCC-CUCUUgCUCUUgGUGCa -3'
miRNA:   3'- -CG-GCGGaAGGaGAGAAaGAGAG-CACG- -5'
8942 5' -52.5 NC_002512.2 + 108514 0.66 0.992385
Target:  5'- cGUCGCCcUCCUCUCcggccCUCUCc-GCc -3'
miRNA:   3'- -CGGCGGaAGGAGAGaaa--GAGAGcaCG- -5'
8942 5' -52.5 NC_002512.2 + 107972 0.66 0.995003
Target:  5'- cGCCGCCUcgUCCcgCUCg--CUCccCGcGCg -3'
miRNA:   3'- -CGGCGGA--AGGa-GAGaaaGAGa-GCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.