miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 98082 0.66 0.959816
Target:  5'- gGGAcgugUCCG-AGC-GGAuGaCGGGGACGGCg -3'
miRNA:   3'- -CCU----AGGUgUCGuCCU-C-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 45524 0.66 0.959816
Target:  5'- ---cCCGCGGCGGGcGGCG---GCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCC-UCGUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 26214 0.66 0.959816
Target:  5'- gGGA-CCACcguGGCGacGGAGaCGGGAcCGGUa -3'
miRNA:   3'- -CCUaGGUG---UCGU--CCUC-GUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 2816 0.66 0.959465
Target:  5'- gGGAcCCGgcGCGGGcGCGGGcccggacGACGGCg -3'
miRNA:   3'- -CCUaGGUguCGUCCuCGUCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12417 0.66 0.958755
Target:  5'- gGGAUCgcgagcucgccgcgCGCgaGGCGGGAGCuGGGcuucuCGGCc -3'
miRNA:   3'- -CCUAG--------------GUG--UCGUCCUCGuCCUu----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 112737 0.66 0.956204
Target:  5'- --uUCCGCGGCAcgcGGAagGCGGaGAGcCGGCc -3'
miRNA:   3'- ccuAGGUGUCGU---CCU--CGUC-CUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 94283 0.66 0.956204
Target:  5'- uGGcGUCCACGGCcgGGGAGCGGucguccaccCGGUu -3'
miRNA:   3'- -CC-UAGGUGUCG--UCCUCGUCcuu------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 37696 0.66 0.956204
Target:  5'- cGGGUCCucccCAGCcgcGGcGCAGG-ACGGa -3'
miRNA:   3'- -CCUAGGu---GUCGu--CCuCGUCCuUGCCg -5'
8943 3' -55.4 NC_002512.2 + 142261 0.66 0.956204
Target:  5'- gGGAUCCGgucgucGUccGGGcCGGGGACGGCg -3'
miRNA:   3'- -CCUAGGUgu----CGucCUC-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 169069 0.66 0.956204
Target:  5'- gGGGcUCCGCGGCGGcGGCGuc-GCGGCc -3'
miRNA:   3'- -CCU-AGGUGUCGUCcUCGUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 98162 0.66 0.956204
Target:  5'- cGGucgCCGCGGUcuGGA-CGGGcGCGGCg -3'
miRNA:   3'- -CCua-GGUGUCGu-CCUcGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 68128 0.66 0.956204
Target:  5'- cGAcCCGC-GUAccGuAGCAGGAGCGGCg -3'
miRNA:   3'- cCUaGGUGuCGU--CcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 136173 0.66 0.955078
Target:  5'- cGAUCCgccgcGCGGCGGGGucGCcGGGAucgcgucgacgccgGCGGCc -3'
miRNA:   3'- cCUAGG-----UGUCGUCCU--CG-UCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 204808 0.67 0.953934
Target:  5'- aGGUCCGCGuccCGGGGGCgcggcggcuccguccGGGAggacgACGGCg -3'
miRNA:   3'- cCUAGGUGUc--GUCCUCG---------------UCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 160768 0.67 0.952377
Target:  5'- cGGAggucCCGgAGCGGGgccggcgcagcAGCAGccACGGCa -3'
miRNA:   3'- -CCUa---GGUgUCGUCC-----------UCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 15411 0.67 0.952377
Target:  5'- cGGAagacgCCGCGGUGGaAGCAGuaGACGGCc -3'
miRNA:   3'- -CCUa----GGUGUCGUCcUCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 41375 0.67 0.952377
Target:  5'- aGGAcgCCGCGcucGUAGGAcaccucguuGCGGGugAACGGCu -3'
miRNA:   3'- -CCUa-GGUGU---CGUCCU---------CGUCC--UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 221442 0.67 0.952377
Target:  5'- cGGA-CCGCGGCcGGGGCGcGGucguccgacCGGCc -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCGU-CCuu-------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 11673 0.67 0.950785
Target:  5'- cGGcccgCCGCGGCccgaggcGGGggcccgaggggcgaGGCAGGAGcCGGCg -3'
miRNA:   3'- -CCua--GGUGUCG-------UCC--------------UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 82049 0.67 0.948331
Target:  5'- cGGcggUCGCGGCGGGAGgAGucGCGcGCg -3'
miRNA:   3'- -CCua-GGUGUCGUCCUCgUCcuUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.