miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 142170 0.66 0.96516
Target:  5'- cGGUCacgacaCACGGCGGGAGaAGGAuccggggucguguCGGCg -3'
miRNA:   3'- cCUAG------GUGUCGUCCUCgUCCUu------------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 56828 0.66 0.963218
Target:  5'- -uGUCCGCAGUuGucGCAGaGGAUGGCc -3'
miRNA:   3'- ccUAGGUGUCGuCcuCGUC-CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 109816 0.66 0.963218
Target:  5'- aGGAUCaguCugAG-GGGAGUccccuGGGGCGGCa -3'
miRNA:   3'- -CCUAG---GugUCgUCCUCGu----CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 61971 0.66 0.963218
Target:  5'- gGGAaa-ACgGGCAGGAGCAcguuGGuGACGGCc -3'
miRNA:   3'- -CCUaggUG-UCGUCCUCGU----CC-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 221387 0.66 0.963218
Target:  5'- --cUCCucgGGCGGGgcgcgGGCGGGGagGCGGCg -3'
miRNA:   3'- ccuAGGug-UCGUCC-----UCGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 207842 0.66 0.963218
Target:  5'- cGAUCC-CGGCgcauccucuuaaAGGAcGCcagcgaguccGGGGACGGCu -3'
miRNA:   3'- cCUAGGuGUCG------------UCCU-CG----------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 4029 0.66 0.963218
Target:  5'- cGGAgagacgaCACc-CGGGA-CAGGAGCGGCu -3'
miRNA:   3'- -CCUag-----GUGucGUCCUcGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 100069 0.66 0.963218
Target:  5'- gGGggCCGCgGGCcGGGGaC-GGAGCGGUc -3'
miRNA:   3'- -CCuaGGUG-UCGuCCUC-GuCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 57012 0.66 0.963218
Target:  5'- cGGGUCgGCGGUcugaccgggGGGAGCGGaGGCcGCg -3'
miRNA:   3'- -CCUAGgUGUCG---------UCCUCGUCcUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 153177 0.66 0.963218
Target:  5'- cGGG---GCGGCGGGcAGCggugGGGAggGCGGCa -3'
miRNA:   3'- -CCUaggUGUCGUCC-UCG----UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83203 0.66 0.963218
Target:  5'- -cGUCCGCGcGCGGG-GCGGGGGgagcguCGGUc -3'
miRNA:   3'- ccUAGGUGU-CGUCCuCGUCCUU------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 35046 0.66 0.962887
Target:  5'- gGGGUCCGCA-CGGGc-CGGGAcagcaccACGGUg -3'
miRNA:   3'- -CCUAGGUGUcGUCCucGUCCU-------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 98082 0.66 0.959816
Target:  5'- gGGAcgugUCCG-AGC-GGAuGaCGGGGACGGCg -3'
miRNA:   3'- -CCU----AGGUgUCGuCCU-C-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 45524 0.66 0.959816
Target:  5'- ---cCCGCGGCGGGcGGCG---GCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCC-UCGUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 26214 0.66 0.959816
Target:  5'- gGGA-CCACcguGGCGacGGAGaCGGGAcCGGUa -3'
miRNA:   3'- -CCUaGGUG---UCGU--CCUC-GUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 118207 0.66 0.959816
Target:  5'- aGGccGUCUGguGCGacGGGGCccucgugcucGGGGACGGCa -3'
miRNA:   3'- -CC--UAGGUguCGU--CCUCG----------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12610 0.66 0.959816
Target:  5'- cGGUCCGCauGGC-GGAGCuGGugaGGCc -3'
miRNA:   3'- cCUAGGUG--UCGuCCUCGuCCuugCCG- -5'
8943 3' -55.4 NC_002512.2 + 113157 0.66 0.959816
Target:  5'- cGGccucgCCGCGGCcGG-GCGGGAcgcgacCGGCg -3'
miRNA:   3'- -CCua---GGUGUCGuCCuCGUCCUu-----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 168097 0.66 0.959816
Target:  5'- gGGAggaUACGuGCGGGAGCAGGGuaGGa -3'
miRNA:   3'- -CCUag-GUGU-CGUCCUCGUCCUugCCg -5'
8943 3' -55.4 NC_002512.2 + 28231 0.66 0.959816
Target:  5'- aGGAaCCGCGGCcGGGGCcgucgcgccgcgAGuacGACGGCg -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCG------------UCc--UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.