miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 43081 0.75 0.602308
Target:  5'- cGGUCCcggggcGCGGCgAGcAGCGGGGACGGCu -3'
miRNA:   3'- cCUAGG------UGUCG-UCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 119317 0.74 0.612272
Target:  5'- aGAUCCugaccCGGCAGGAccucccgcGCGGGGGCGGa -3'
miRNA:   3'- cCUAGGu----GUCGUCCU--------CGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 81979 0.74 0.612272
Target:  5'- cGGGUggUgGCGGCGGGGGCgucucGGGGGCGGUc -3'
miRNA:   3'- -CCUA--GgUGUCGUCCUCG-----UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 128196 0.74 0.642221
Target:  5'- cGGG-CCGcCGGCGGGAcCGGGGACGGg -3'
miRNA:   3'- -CCUaGGU-GUCGUCCUcGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 226590 0.74 0.642221
Target:  5'- aGGAgggCGCGGCccGGGGGaggaGGGGACGGCg -3'
miRNA:   3'- -CCUag-GUGUCG--UCCUCg---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 22981 0.74 0.642221
Target:  5'- ---cCCGCGGCGGGAcGCGGG--CGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCCU-CGUCCuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 56520 0.74 0.652199
Target:  5'- aGGUCCGCgaggAGCacGGGAGCAGGAcguccaGGCg -3'
miRNA:   3'- cCUAGGUG----UCG--UCCUCGUCCUug----CCG- -5'
8943 3' -55.4 NC_002512.2 + 227605 0.74 0.662162
Target:  5'- ---cCCGCAGCGGccggaGGGCGGGcGGCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUC-----CUCGUCC-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 166451 0.74 0.662162
Target:  5'- gGGggCgACGGCgccgggcucgAGG-GCGGGGACGGCg -3'
miRNA:   3'- -CCuaGgUGUCG----------UCCuCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 11444 0.73 0.672101
Target:  5'- gGGAcgCCGCGGaCGGGGGCcggggaAGGGGCGGa -3'
miRNA:   3'- -CCUa-GGUGUC-GUCCUCG------UCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 110263 0.73 0.672101
Target:  5'- aGcgCCGC-GCuGGGGCGGGAggcgaGCGGCg -3'
miRNA:   3'- cCuaGGUGuCGuCCUCGUCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 149502 0.73 0.672101
Target:  5'- cGGGUggucaaaaggCCGCGGCcGGAGCGGGc-CGGCc -3'
miRNA:   3'- -CCUA----------GGUGUCGuCCUCGUCCuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 222402 0.73 0.68201
Target:  5'- uGGAgcgCCGCGGCuucGGCGGGGGcCGGCa -3'
miRNA:   3'- -CCUa--GGUGUCGuccUCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 85815 0.73 0.68201
Target:  5'- ---aCCACAuCAGGGGacagaaAGGAACGGCg -3'
miRNA:   3'- ccuaGGUGUcGUCCUCg-----UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 152911 0.73 0.68201
Target:  5'- cGGUCCcCGGUcGGucAGCGGGAGCGGUc -3'
miRNA:   3'- cCUAGGuGUCGuCC--UCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 54250 0.73 0.68201
Target:  5'- -cGUCCGCAGC---GGCAGGGcgGCGGCg -3'
miRNA:   3'- ccUAGGUGUCGuccUCGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 170821 0.73 0.68201
Target:  5'- gGGggCgGCAGCGGcGGCAGcGGCGGCg -3'
miRNA:   3'- -CCuaGgUGUCGUCcUCGUCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 122182 0.73 0.691879
Target:  5'- cGGAUCCcaacACGGCGguggcggaggcGGAGauccagaaGGGGACGGCg -3'
miRNA:   3'- -CCUAGG----UGUCGU-----------CCUCg-------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 130463 0.73 0.691879
Target:  5'- -cGUCCGa--CAGGAGCGGGGGCGGa -3'
miRNA:   3'- ccUAGGUgucGUCCUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 84621 0.73 0.691879
Target:  5'- -cAUCCGCAGCAGGucgucgucCAGGcGGCGGCc -3'
miRNA:   3'- ccUAGGUGUCGUCCuc------GUCC-UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.