miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 21253 0.72 0.730799
Target:  5'- cGGAg--AgGGCuGGAGCGGGAGCGGg -3'
miRNA:   3'- -CCUaggUgUCGuCCUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 21456 0.7 0.845514
Target:  5'- cGAUCgGgGGCcGGcGcCGGGAGCGGCg -3'
miRNA:   3'- cCUAGgUgUCGuCCuC-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 22352 0.68 0.901791
Target:  5'- aGGAgUCGCAGCGGGAGgAc--GCGGCc -3'
miRNA:   3'- -CCUaGGUGUCGUCCUCgUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 22981 0.74 0.642221
Target:  5'- ---cCCGCGGCGGGAcGCGGG--CGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCCU-CGUCCuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 23401 0.76 0.533502
Target:  5'- uGAUCCACGGCGGGAGgaagcugauCGGGAcGCuGGCc -3'
miRNA:   3'- cCUAGGUGUCGUCCUC---------GUCCU-UG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 24261 0.67 0.948331
Target:  5'- ---cCCGCgGGCAGGAaggacgGCGGcGACGGCa -3'
miRNA:   3'- ccuaGGUG-UCGUCCU------CGUCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 24531 0.71 0.804188
Target:  5'- --uUCC-CGGuCAGcGAGCGGGGACGGa -3'
miRNA:   3'- ccuAGGuGUC-GUC-CUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 24843 0.68 0.929913
Target:  5'- cGGGcCCGCGGCcGGucGGCGGcGGacGCGGCc -3'
miRNA:   3'- -CCUaGGUGUCGuCC--UCGUC-CU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 25202 0.76 0.514321
Target:  5'- -cGUCCGCcGCGacGGAGCGGGAGCGaGCc -3'
miRNA:   3'- ccUAGGUGuCGU--CCUCGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 26214 0.66 0.959816
Target:  5'- gGGA-CCACcguGGCGacGGAGaCGGGAcCGGUa -3'
miRNA:   3'- -CCUaGGUG---UCGU--CCUC-GUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 26646 0.76 0.533502
Target:  5'- uGAUCCAcCAGCgcacgaggucGGGGGCGGGcucgaAGCGGCa -3'
miRNA:   3'- cCUAGGU-GUCG----------UCCUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 27553 0.66 0.966413
Target:  5'- gGGcgCUaaguaGCGuGUAGGAGUggcGGAGCGGCc -3'
miRNA:   3'- -CCuaGG-----UGU-CGUCCUCGu--CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 28058 0.68 0.901791
Target:  5'- ---gCCGCGGaAGGAGCccccGGGcGCGGCg -3'
miRNA:   3'- ccuaGGUGUCgUCCUCG----UCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 28231 0.66 0.959816
Target:  5'- aGGAaCCGCGGCcGGGGCcgucgcgccgcgAGuacGACGGCg -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCG------------UCc--UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 28962 0.69 0.895494
Target:  5'- aGAUCCugAGcCAGGugaAGCAGuacACGGCc -3'
miRNA:   3'- cCUAGGugUC-GUCC---UCGUCcu-UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 33018 0.76 0.504836
Target:  5'- -cAUCCGCGGCAGagcgacGGGCAGGucguaGACGGCg -3'
miRNA:   3'- ccUAGGUGUCGUC------CUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 34937 0.79 0.397975
Target:  5'- cGGggUCGCGGCgacgGGGAGC-GGAGCGGCc -3'
miRNA:   3'- -CCuaGGUGUCG----UCCUCGuCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 35046 0.66 0.962887
Target:  5'- gGGGUCCGCA-CGGGc-CGGGAcagcaccACGGUg -3'
miRNA:   3'- -CCUAGGUGUcGUCCucGUCCU-------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 36860 0.67 0.943625
Target:  5'- cGGG-CCgauaggcguacuuGCAGguGG-GCAGG-GCGGCg -3'
miRNA:   3'- -CCUaGG-------------UGUCguCCuCGUCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 37138 0.68 0.906067
Target:  5'- cGAagUACAGCAGGAagGcCAGGAcgacgaaggccacgACGGCg -3'
miRNA:   3'- cCUagGUGUCGUCCU--C-GUCCU--------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.