miRNA display CGI


Results 21 - 40 of 384 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 8310 0.68 0.901791
Target:  5'- cGGGUCgACggAGCAGGGcCGGGAGcCGGa -3'
miRNA:   3'- -CCUAGgUG--UCGUCCUcGUCCUU-GCCg -5'
8943 3' -55.4 NC_002512.2 + 8345 0.75 0.552932
Target:  5'- cGGGUCCGgcguagcgguaGGCGGGAGCgccgAGGAuccGCGGCg -3'
miRNA:   3'- -CCUAGGUg----------UCGUCCUCG----UCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 9305 0.67 0.939573
Target:  5'- cGGAUCC-CGGCAcuccaucGGGCGGcGcACGGCc -3'
miRNA:   3'- -CCUAGGuGUCGUc------CUCGUC-CuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 9485 0.67 0.934857
Target:  5'- cGGGcCCGCgAGCGGcGGGUAGacGACGGCc -3'
miRNA:   3'- -CCUaGGUG-UCGUC-CUCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 10772 0.69 0.895494
Target:  5'- cGGccccgCCGCGGUAGGcGUAGuAGCGGCc -3'
miRNA:   3'- -CCua---GGUGUCGUCCuCGUCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 11385 0.66 0.971936
Target:  5'- gGGGUCCgACGGCucGGAcgcggacgacccGCGGGAcgaggagaugaccGCGGUc -3'
miRNA:   3'- -CCUAGG-UGUCGu-CCU------------CGUCCU-------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 11444 0.73 0.672101
Target:  5'- gGGAcgCCGCGGaCGGGGGCcggggaAGGGGCGGa -3'
miRNA:   3'- -CCUa-GGUGUC-GUCCUCG------UCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 11564 0.67 0.948331
Target:  5'- aGGA-CgAgGGCuacgGGGAGCAcGAGCGGCc -3'
miRNA:   3'- -CCUaGgUgUCG----UCCUCGUcCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 11673 0.67 0.950785
Target:  5'- cGGcccgCCGCGGCccgaggcGGGggcccgaggggcgaGGCAGGAGcCGGCg -3'
miRNA:   3'- -CCua--GGUGUCG-------UCC--------------UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 12417 0.66 0.958755
Target:  5'- gGGAUCgcgagcucgccgcgCGCgaGGCGGGAGCuGGGcuucuCGGCc -3'
miRNA:   3'- -CCUAG--------------GUG--UCGUCCUCGuCCUu----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 12610 0.66 0.959816
Target:  5'- cGGUCCGCauGGC-GGAGCuGGugaGGCc -3'
miRNA:   3'- cCUAGGUG--UCGuCCUCGuCCuugCCG- -5'
8943 3' -55.4 NC_002512.2 + 13716 0.68 0.901791
Target:  5'- cGAUCC-CGagacGCGGGAGCcuGAGgGGCg -3'
miRNA:   3'- cCUAGGuGU----CGUCCUCGucCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 14166 0.66 0.966413
Target:  5'- aGGUCUcgACGuGCGGGcagAGCGGGAuGCGGUc -3'
miRNA:   3'- cCUAGG--UGU-CGUCC---UCGUCCU-UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 14484 0.66 0.972207
Target:  5'- uGGG-CCAgGGCAGGGcgaacaugguGCcGGGGCuGGCg -3'
miRNA:   3'- -CCUaGGUgUCGUCCU----------CGuCCUUG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 14627 0.68 0.924213
Target:  5'- cGGAggCCGCgcuugaggaaGGCGGcguagcugugggcGAGCAGGuaGACGGCg -3'
miRNA:   3'- -CCUa-GGUG----------UCGUC-------------CUCGUCC--UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 15411 0.67 0.952377
Target:  5'- cGGAagacgCCGCGGUGGaAGCAGuaGACGGCc -3'
miRNA:   3'- -CCUa----GGUGUCGUCcUCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 16261 0.66 0.972207
Target:  5'- ---cCCGCGGCGGccaaGAGuCAGGGaccggacgcgACGGCg -3'
miRNA:   3'- ccuaGGUGUCGUC----CUC-GUCCU----------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 17004 0.66 0.967635
Target:  5'- cGGUCCAUGGCcgccgucuccggAGGAGgGGacgcucggaggggacGGACGGCg -3'
miRNA:   3'- cCUAGGUGUCG------------UCCUCgUC---------------CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 18429 0.7 0.83759
Target:  5'- cGGAUCCGgGGCAGccGCAGGcGCccgagcuccgGGCa -3'
miRNA:   3'- -CCUAGGUgUCGUCcuCGUCCuUG----------CCG- -5'
8943 3' -55.4 NC_002512.2 + 18684 0.67 0.947914
Target:  5'- aGGAagagCUcguggGCGGCGGGcaccccgAGCAGG-GCGGCg -3'
miRNA:   3'- -CCUa---GG-----UGUCGUCC-------UCGUCCuUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.