miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 35046 0.66 0.962887
Target:  5'- gGGGUCCGCA-CGGGc-CGGGAcagcaccACGGUg -3'
miRNA:   3'- -CCUAGGUGUcGUCCucGUCCU-------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12610 0.66 0.959816
Target:  5'- cGGUCCGCauGGC-GGAGCuGGugaGGCc -3'
miRNA:   3'- cCUAGGUG--UCGuCCUCGuCCuugCCG- -5'
8943 3' -55.4 NC_002512.2 + 132982 0.66 0.972207
Target:  5'- -cAUCCGCgGGUAGuAGCAGGGGaaccCGGCc -3'
miRNA:   3'- ccUAGGUG-UCGUCcUCGUCCUU----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 11385 0.66 0.971936
Target:  5'- gGGGUCCgACGGCucGGAcgcggacgacccGCGGGAcgaggagaugaccGCGGUc -3'
miRNA:   3'- -CCUAGG-UGUCGu-CCU------------CGUCCU-------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 37696 0.66 0.956204
Target:  5'- cGGGUCCucccCAGCcgcGGcGCAGG-ACGGa -3'
miRNA:   3'- -CCUAGGu---GUCGu--CCuCGUCCuUGCCg -5'
8943 3' -55.4 NC_002512.2 + 87088 0.66 0.96853
Target:  5'- cGGGUCgCGgGGCgacgugcugGGGAGguGGcggaacaucucggaGGCGGCg -3'
miRNA:   3'- -CCUAG-GUgUCG---------UCCUCguCC--------------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 59832 0.66 0.969408
Target:  5'- aGGcggCCGCGGCGGcGGCGGccAUGGCc -3'
miRNA:   3'- -CCua-GGUGUCGUCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 57844 0.66 0.966103
Target:  5'- cGGAUgaCCcgGCGGguGGGGCGcaugcugccggccGGAcCGGCg -3'
miRNA:   3'- -CCUA--GG--UGUCguCCUCGU-------------CCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 17004 0.66 0.967635
Target:  5'- cGGUCCAUGGCcgccgucuccggAGGAGgGGacgcucggaggggacGGACGGCg -3'
miRNA:   3'- cCUAGGUGUCG------------UCCUCgUC---------------CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 4029 0.66 0.963218
Target:  5'- cGGAgagacgaCACc-CGGGA-CAGGAGCGGCu -3'
miRNA:   3'- -CCUag-----GUGucGUCCUcGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 126157 0.66 0.966413
Target:  5'- aGGAUcgCCGCGGUccGGuuCAGGAucaugGCGGCg -3'
miRNA:   3'- -CCUA--GGUGUCGu-CCucGUCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 45524 0.66 0.959816
Target:  5'- ---cCCGCGGCGGGcGGCG---GCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCC-UCGUccuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 68128 0.66 0.956204
Target:  5'- cGAcCCGC-GUAccGuAGCAGGAGCGGCg -3'
miRNA:   3'- cCUaGGUGuCGU--CcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 133864 0.66 0.969408
Target:  5'- aGGAcgUCCugggGCGGCucgAGGAGCGGcu-CGGCc -3'
miRNA:   3'- -CCU--AGG----UGUCG---UCCUCGUCcuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 167599 0.66 0.966413
Target:  5'- aGAUCCAUccaggcugccaGGCGGGAucCGGGGugGGa -3'
miRNA:   3'- cCUAGGUG-----------UCGUCCUc-GUCCUugCCg -5'
8943 3' -55.4 NC_002512.2 + 56828 0.66 0.963218
Target:  5'- -uGUCCGCAGUuGucGCAGaGGAUGGCc -3'
miRNA:   3'- ccUAGGUGUCGuCcuCGUC-CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7491 0.66 0.969408
Target:  5'- cGAagCCGCGGCgcuccaugAGGAGCcagagcccgccgGGGAagGCGGCc -3'
miRNA:   3'- cCUa-GGUGUCG--------UCCUCG------------UCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 2816 0.66 0.959465
Target:  5'- gGGAcCCGgcGCGGGcGCGGGcccggacGACGGCg -3'
miRNA:   3'- -CCUaGGUguCGUCCuCGUCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 155259 0.66 0.972207
Target:  5'- cGGcGUCgACGGCucgcGGGAGCcGaGGCGGCu -3'
miRNA:   3'- -CC-UAGgUGUCG----UCCUCGuCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83203 0.66 0.963218
Target:  5'- -cGUCCGCGcGCGGG-GCGGGGGgagcguCGGUc -3'
miRNA:   3'- ccUAGGUGU-CGUCCuCGUCCUU------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.