miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 17004 0.66 0.967635
Target:  5'- cGGUCCAUGGCcgccgucuccggAGGAGgGGacgcucggaggggacGGACGGCg -3'
miRNA:   3'- cCUAGGUGUCG------------UCCUCgUC---------------CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 57012 0.66 0.963218
Target:  5'- cGGGUCgGCGGUcugaccgggGGGAGCGGaGGCcGCg -3'
miRNA:   3'- -CCUAGgUGUCG---------UCCUCGUCcUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 47819 0.66 0.969408
Target:  5'- cGGAgCCGCGGCuGaGGUcGGcGCGGCu -3'
miRNA:   3'- -CCUaGGUGUCGuCcUCGuCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 50039 0.66 0.966413
Target:  5'- gGGcgCgCACAcGCGGGGGCuGGugcuGACGGa -3'
miRNA:   3'- -CCuaG-GUGU-CGUCCUCGuCC----UUGCCg -5'
8943 3' -55.4 NC_002512.2 + 26214 0.66 0.959816
Target:  5'- gGGA-CCACcguGGCGacGGAGaCGGGAcCGGUa -3'
miRNA:   3'- -CCUaGGUG---UCGU--CCUC-GUCCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 68128 0.66 0.956204
Target:  5'- cGAcCCGC-GUAccGuAGCAGGAGCGGCg -3'
miRNA:   3'- cCUaGGUGuCGU--CcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 142261 0.66 0.956204
Target:  5'- gGGAUCCGgucgucGUccGGGcCGGGGACGGCg -3'
miRNA:   3'- -CCUAGGUgu----CGucCUC-GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 136110 0.66 0.966413
Target:  5'- cGGcggCCACAGCgacggggaGGGAGaAGGGAaaagaGGCg -3'
miRNA:   3'- -CCua-GGUGUCG--------UCCUCgUCCUUg----CCG- -5'
8943 3' -55.4 NC_002512.2 + 122382 0.66 0.966413
Target:  5'- cGGGUCCAgCcGCAGaGAccgcuGCGGGccggucGCGGCg -3'
miRNA:   3'- -CCUAGGU-GuCGUC-CU-----CGUCCu-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 49432 0.66 0.972207
Target:  5'- ---aCCACAuccCAGGGGCGGGgugaaaGugGGCu -3'
miRNA:   3'- ccuaGGUGUc--GUCCUCGUCC------UugCCG- -5'
8943 3' -55.4 NC_002512.2 + 142170 0.66 0.96516
Target:  5'- cGGUCacgacaCACGGCGGGAGaAGGAuccggggucguguCGGCg -3'
miRNA:   3'- cCUAG------GUGUCGUCCUCgUCCUu------------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 103699 0.66 0.966413
Target:  5'- cGGA--CGCGGCGGGAGgGGGcGCcGCc -3'
miRNA:   3'- -CCUagGUGUCGUCCUCgUCCuUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 187105 0.66 0.966413
Target:  5'- cGA-CCgACAGCccuacguggaccAGGGGCAGGGGCuGCc -3'
miRNA:   3'- cCUaGG-UGUCG------------UCCUCGUCCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 155259 0.66 0.972207
Target:  5'- cGGcGUCgACGGCucgcGGGAGCcGaGGCGGCu -3'
miRNA:   3'- -CC-UAGgUGUCG----UCCUCGuCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 118907 0.66 0.972207
Target:  5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3'
miRNA:   3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 227236 0.66 0.966413
Target:  5'- gGGAggCGCGGCGGacGGGCGGGcaucagGACGaGCg -3'
miRNA:   3'- -CCUagGUGUCGUC--CUCGUCC------UUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 59832 0.66 0.969408
Target:  5'- aGGcggCCGCGGCGGcGGCGGccAUGGCc -3'
miRNA:   3'- -CCua-GGUGUCGUCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 117803 0.66 0.966413
Target:  5'- uGGGUCCGC--CAGGcGaCGGGcucGCGGCg -3'
miRNA:   3'- -CCUAGGUGucGUCCuC-GUCCu--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 12417 0.66 0.958755
Target:  5'- gGGAUCgcgagcucgccgcgCGCgaGGCGGGAGCuGGGcuucuCGGCc -3'
miRNA:   3'- -CCUAG--------------GUG--UCGUCCUCGuCCUu----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 129848 0.66 0.969408
Target:  5'- uGGAggCGgaGGCGGaGGCGGaGGACGGCg -3'
miRNA:   3'- -CCUagGUg-UCGUCcUCGUC-CUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.