miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 120779 0.8 0.35026
Target:  5'- cGGcggCCGuCGGCGGGGGCGgcGGGACGGCg -3'
miRNA:   3'- -CCua-GGU-GUCGUCCUCGU--CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 44427 0.8 0.342714
Target:  5'- aGGA-CCACGGCgaAGGAGCAGaGGGCGGa -3'
miRNA:   3'- -CCUaGGUGUCG--UCCUCGUC-CUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 137487 0.8 0.333079
Target:  5'- cGGAUCCAgCAGCGGGAacugcaggaccgacGuCAGGAACGGg -3'
miRNA:   3'- -CCUAGGU-GUCGUCCU--------------C-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 85564 0.8 0.327975
Target:  5'- aGGAg--GC-GCGGGAGCGGGAGCGGCc -3'
miRNA:   3'- -CCUaggUGuCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 80769 0.82 0.273758
Target:  5'- gGGGUCCucGCGGCucGAGgAGGAGCGGCg -3'
miRNA:   3'- -CCUAGG--UGUCGucCUCgUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 97374 0.76 0.533502
Target:  5'- gGGA-CCGCGGCGgccGGAGaCGGGGGCGGg -3'
miRNA:   3'- -CCUaGGUGUCGU---CCUC-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 23401 0.76 0.533502
Target:  5'- uGAUCCACGGCGGGAGgaagcugauCGGGAcGCuGGCc -3'
miRNA:   3'- cCUAGGUGUCGUCCUC---------GUCCU-UG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 110263 0.73 0.672101
Target:  5'- aGcgCCGC-GCuGGGGCGGGAggcgaGCGGCg -3'
miRNA:   3'- cCuaGGUGuCGuCCUCGUCCU-----UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 11444 0.73 0.672101
Target:  5'- gGGAcgCCGCGGaCGGGGGCcggggaAGGGGCGGa -3'
miRNA:   3'- -CCUa-GGUGUC-GUCCUCG------UCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 56520 0.74 0.652199
Target:  5'- aGGUCCGCgaggAGCacGGGAGCAGGAcguccaGGCg -3'
miRNA:   3'- cCUAGGUG----UCG--UCCUCGUCCUug----CCG- -5'
8943 3' -55.4 NC_002512.2 + 128196 0.74 0.642221
Target:  5'- cGGG-CCGcCGGCGGGAcCGGGGACGGg -3'
miRNA:   3'- -CCUaGGU-GUCGUCCUcGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 22981 0.74 0.642221
Target:  5'- ---cCCGCGGCGGGAcGCGGG--CGGCg -3'
miRNA:   3'- ccuaGGUGUCGUCCU-CGUCCuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 81979 0.74 0.612272
Target:  5'- cGGGUggUgGCGGCGGGGGCgucucGGGGGCGGUc -3'
miRNA:   3'- -CCUA--GgUGUCGUCCUCG-----UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 43081 0.75 0.602308
Target:  5'- cGGUCCcggggcGCGGCgAGcAGCGGGGACGGCu -3'
miRNA:   3'- cCUAGG------UGUCG-UCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 109769 0.75 0.602308
Target:  5'- uGGAUCCAUAGCGGucgaggcgcacGGGCgccagGGGGAgGGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-----------CUCG-----UCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 82232 0.75 0.592365
Target:  5'- cGGggCCGguGaCGGuAGCGGGAGCGGCc -3'
miRNA:   3'- -CCuaGGUguC-GUCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83754 0.75 0.572569
Target:  5'- cGAUCUuccgGCGGCAGGuGCAGaaGACGGCg -3'
miRNA:   3'- cCUAGG----UGUCGUCCuCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 82345 0.75 0.552932
Target:  5'- cGGGUa-GCGGUGGGcguGCGGGGGCGGCg -3'
miRNA:   3'- -CCUAggUGUCGUCCu--CGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 8345 0.75 0.552932
Target:  5'- cGGGUCCGgcguagcgguaGGCGGGAGCgccgAGGAuccGCGGCg -3'
miRNA:   3'- -CCUAGGUg----------UCGUCCUCG----UCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 154561 0.75 0.552932
Target:  5'- cGGucgCCAUGG-GGGGGCAGGAuaACGGCg -3'
miRNA:   3'- -CCua-GGUGUCgUCCUCGUCCU--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.