miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 113238 0.78 0.440788
Target:  5'- cGGGcaCgGCAGCAGGAGCcucggcagcgagGGGGGCGGCc -3'
miRNA:   3'- -CCUa-GgUGUCGUCCUCG------------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 103048 0.77 0.458632
Target:  5'- aGAcCgGgGGCAGGAGCgcgGGGAACGGCa -3'
miRNA:   3'- cCUaGgUgUCGUCCUCG---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 158981 0.77 0.467697
Target:  5'- cGGcggCCACGGCGGG-GCGGaGGCGGCg -3'
miRNA:   3'- -CCua-GGUGUCGUCCuCGUCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 152498 0.77 0.495427
Target:  5'- cGGcgCCACGGguGGAGCguuccggggucGGGGucuCGGCg -3'
miRNA:   3'- -CCuaGGUGUCguCCUCG-----------UCCUu--GCCG- -5'
8943 3' -55.4 NC_002512.2 + 72243 0.77 0.495427
Target:  5'- aGGAUCUugGugucccGCAGGuGCAGGAagcccuucuucaGCGGCg -3'
miRNA:   3'- -CCUAGGugU------CGUCCuCGUCCU------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 33018 0.76 0.504836
Target:  5'- -cAUCCGCGGCAGagcgacGGGCAGGucguaGACGGCg -3'
miRNA:   3'- ccUAGGUGUCGUC------CUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 25202 0.76 0.514321
Target:  5'- -cGUCCGCcGCGacGGAGCGGGAGCGaGCc -3'
miRNA:   3'- ccUAGGUGuCGU--CCUCGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 152959 0.76 0.514321
Target:  5'- cGGUCCcCGGuCGGGucGGCGGGAGCGGUc -3'
miRNA:   3'- cCUAGGuGUC-GUCC--UCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 153009 0.76 0.514321
Target:  5'- cGGUCCcCGGuCGGGucGGCGGGAGCGGUc -3'
miRNA:   3'- cCUAGGuGUC-GUCC--UCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 91016 0.76 0.52292
Target:  5'- cGGAggcCCAuCAGCGGGAuacggggacugguGCGGGAGCGGg -3'
miRNA:   3'- -CCUa--GGU-GUCGUCCU-------------CGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 26646 0.76 0.533502
Target:  5'- uGAUCCAcCAGCgcacgaggucGGGGGCGGGcucgaAGCGGCa -3'
miRNA:   3'- cCUAGGU-GUCG----------UCCUCGUCC-----UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 23401 0.76 0.533502
Target:  5'- uGAUCCACGGCGGGAGgaagcugauCGGGAcGCuGGCc -3'
miRNA:   3'- cCUAGGUGUCGUCCUC---------GUCCU-UG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 97374 0.76 0.533502
Target:  5'- gGGA-CCGCGGCGgccGGAGaCGGGGGCGGg -3'
miRNA:   3'- -CCUaGGUGUCGU---CCUC-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 194787 0.75 0.550004
Target:  5'- gGGAacUCCGagcgggagcugagcCGGguGGAGCAGGAGCucGGCa -3'
miRNA:   3'- -CCU--AGGU--------------GUCguCCUCGUCCUUG--CCG- -5'
8943 3' -55.4 NC_002512.2 + 8345 0.75 0.552932
Target:  5'- cGGGUCCGgcguagcgguaGGCGGGAGCgccgAGGAuccGCGGCg -3'
miRNA:   3'- -CCUAGGUg----------UCGUCCUCG----UCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 154561 0.75 0.552932
Target:  5'- cGGucgCCAUGG-GGGGGCAGGAuaACGGCg -3'
miRNA:   3'- -CCua-GGUGUCgUCCUCGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 82345 0.75 0.552932
Target:  5'- cGGGUa-GCGGUGGGcguGCGGGGGCGGCg -3'
miRNA:   3'- -CCUAggUGUCGUCCu--CGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 83754 0.75 0.572569
Target:  5'- cGAUCUuccgGCGGCAGGuGCAGaaGACGGCg -3'
miRNA:   3'- cCUAGG----UGUCGUCCuCGUCc-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 82232 0.75 0.592365
Target:  5'- cGGggCCGguGaCGGuAGCGGGAGCGGCc -3'
miRNA:   3'- -CCuaGGUguC-GUCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 109769 0.75 0.602308
Target:  5'- uGGAUCCAUAGCGGucgaggcgcacGGGCgccagGGGGAgGGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-----------CUCG-----UCCUUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.