miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 227149 1.15 0.002223
Target:  5'- aGGAUCCACAGCAGGAGCAGGAACGGCa -3'
miRNA:   3'- -CCUAGGUGUCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228158 0.89 0.099766
Target:  5'- aGGUCCACgcggAGCcGGAGCGGGAGCGGCa -3'
miRNA:   3'- cCUAGGUG----UCGuCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 149424 0.85 0.173847
Target:  5'- gGGA-CCGCGGCGGGGGCGGGcGCGGg -3'
miRNA:   3'- -CCUaGGUGUCGUCCUCGUCCuUGCCg -5'
8943 3' -55.4 NC_002512.2 + 181575 0.83 0.221617
Target:  5'- gGGGUCCGuCuGCGGcGGCAGGGGCGGCg -3'
miRNA:   3'- -CCUAGGU-GuCGUCcUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 223887 0.83 0.226965
Target:  5'- aGGAggCCGaggAGgAGGAGCGGGAGCGGCg -3'
miRNA:   3'- -CCUa-GGUg--UCgUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 2078 0.83 0.237989
Target:  5'- cGGAgUCCACgccgGGCGGGAGCGGGcgguACGGCc -3'
miRNA:   3'- -CCU-AGGUG----UCGUCCUCGUCCu---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 80769 0.82 0.273758
Target:  5'- gGGGUCCucGCGGCucGAGgAGGAGCGGCg -3'
miRNA:   3'- -CCUAGG--UGUCGucCUCgUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 170324 0.81 0.306756
Target:  5'- uGGAgCUGCAGCAGGuGCAGGAAcuCGGUg -3'
miRNA:   3'- -CCUaGGUGUCGUCCuCGUCCUU--GCCG- -5'
8943 3' -55.4 NC_002512.2 + 222338 0.81 0.306756
Target:  5'- cGGcgCCucCAGgAGGAGgAGGAGCGGCa -3'
miRNA:   3'- -CCuaGGu-GUCgUCCUCgUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 85564 0.8 0.327975
Target:  5'- aGGAg--GC-GCGGGAGCGGGAGCGGCc -3'
miRNA:   3'- -CCUaggUGuCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 137487 0.8 0.333079
Target:  5'- cGGAUCCAgCAGCGGGAacugcaggaccgacGuCAGGAACGGg -3'
miRNA:   3'- -CCUAGGU-GUCGUCCU--------------C-GUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 44427 0.8 0.342714
Target:  5'- aGGA-CCACGGCgaAGGAGCAGaGGGCGGa -3'
miRNA:   3'- -CCUaGGUGUCG--UCCUCGUC-CUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 120779 0.8 0.35026
Target:  5'- cGGcggCCGuCGGCGGGGGCGgcGGGACGGCg -3'
miRNA:   3'- -CCua-GGU-GUCGUCCUCGU--CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 192019 0.79 0.389737
Target:  5'- -cGUCC-UGGCGGGcGCGGGAGCGGCg -3'
miRNA:   3'- ccUAGGuGUCGUCCuCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 34937 0.79 0.397975
Target:  5'- cGGggUCGCGGCgacgGGGAGC-GGAGCGGCc -3'
miRNA:   3'- -CCuaGGUGUCG----UCCUCGuCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 157135 0.78 0.414781
Target:  5'- gGGGUCgGCGGCGGGcccggggcgggcGGCGGGccgGGCGGCg -3'
miRNA:   3'- -CCUAGgUGUCGUCC------------UCGUCC---UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 156432 0.78 0.422484
Target:  5'- -uGUCCGCGGCcgggcugGGGGGCuccGGGGGCGGCg -3'
miRNA:   3'- ccUAGGUGUCG-------UCCUCG---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228417 0.78 0.432016
Target:  5'- gGGcgCUggGgGGCGGGGGCGGGAACGGg -3'
miRNA:   3'- -CCuaGG--UgUCGUCCUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 113238 0.78 0.440788
Target:  5'- cGGGcaCgGCAGCAGGAGCcucggcagcgagGGGGGCGGCc -3'
miRNA:   3'- -CCUa-GgUGUCGUCCUCG------------UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 3370 0.78 0.440788
Target:  5'- aGGA-CgGCGGCAGGgccgccAGCAGGAcccGCGGCg -3'
miRNA:   3'- -CCUaGgUGUCGUCC------UCGUCCU---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.