miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 225502 0.72 0.727918
Target:  5'- cGGggCCGCcGCGGGGGUcccgggcuucgcggAcGGGACGGCg -3'
miRNA:   3'- -CCuaGGUGuCGUCCUCG--------------U-CCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 224136 0.67 0.934373
Target:  5'- uGGAcCCGCgccgggaGGCGgacgcgugaggcGGGGCGGGGGCGcGCg -3'
miRNA:   3'- -CCUaGGUG-------UCGU------------CCUCGUCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 223887 0.83 0.226965
Target:  5'- aGGAggCCGaggAGgAGGAGCGGGAGCGGCg -3'
miRNA:   3'- -CCUa-GGUg--UCgUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 223259 0.68 0.924743
Target:  5'- gGGcGUCCGCGucGUcgGGGGGCGGGAcgccGCGcGCa -3'
miRNA:   3'- -CC-UAGGUGU--CG--UCCUCGUCCU----UGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 223089 0.78 0.440788
Target:  5'- cGGGUCCGCGGCugcgucgacgGGGAGgGGGAuccGCGGg -3'
miRNA:   3'- -CCUAGGUGUCG----------UCCUCgUCCU---UGCCg -5'
8943 3' -55.4 NC_002512.2 + 222402 0.73 0.68201
Target:  5'- uGGAgcgCCGCGGCuucGGCGGGGGcCGGCa -3'
miRNA:   3'- -CCUa--GGUGUCGuccUCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 222338 0.81 0.306756
Target:  5'- cGGcgCCucCAGgAGGAGgAGGAGCGGCa -3'
miRNA:   3'- -CCuaGGu-GUCgUCCUCgUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 221604 0.68 0.901171
Target:  5'- gGGGUCgguggACGGCgaggaGGGAGCGGGuccacccGGCGGCc -3'
miRNA:   3'- -CCUAGg----UGUCG-----UCCUCGUCC-------UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 221442 0.67 0.952377
Target:  5'- cGGA-CCGCGGCcGGGGCGcGGucguccgacCGGCc -3'
miRNA:   3'- -CCUaGGUGUCGuCCUCGU-CCuu-------GCCG- -5'
8943 3' -55.4 NC_002512.2 + 221387 0.66 0.963218
Target:  5'- --cUCCucgGGCGGGgcgcgGGCGGGGagGCGGCg -3'
miRNA:   3'- ccuAGGug-UCGUCC-----UCGUCCU--UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 220120 0.68 0.924743
Target:  5'- uGAgccgCCAC-GCGGGgcGGCGGGucCGGCu -3'
miRNA:   3'- cCUa---GGUGuCGUCC--UCGUCCuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 218221 0.67 0.947914
Target:  5'- cGGG-CCGCGGCGGGccgcGGCGccgauauauguccGGGuCGGCg -3'
miRNA:   3'- -CCUaGGUGUCGUCC----UCGU-------------CCUuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 217826 0.7 0.83759
Target:  5'- -cGUCgACGGCGGGcgguucGGCAGaGGCGGCa -3'
miRNA:   3'- ccUAGgUGUCGUCC------UCGUCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 217720 0.72 0.768417
Target:  5'- aGGUCCGCuuCAGGggcGGCAGGGACcGCg -3'
miRNA:   3'- cCUAGGUGucGUCC---UCGUCCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 217095 0.7 0.840781
Target:  5'- -cAUCCGCAGgGGcAGCGGGGgcgccgccgaguccuGCGGCg -3'
miRNA:   3'- ccUAGGUGUCgUCcUCGUCCU---------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 216414 0.71 0.804188
Target:  5'- ---gCCGCAGCAGGucCGGGGACgccaGGCu -3'
miRNA:   3'- ccuaGGUGUCGUCCucGUCCUUG----CCG- -5'
8943 3' -55.4 NC_002512.2 + 216209 0.71 0.794566
Target:  5'- ---gCCGCGGCcgucgccucguccGGGAGCuGGAgccGCGGCg -3'
miRNA:   3'- ccuaGGUGUCG-------------UCCUCGuCCU---UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 215614 0.66 0.971936
Target:  5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 215442 0.71 0.786567
Target:  5'- aGAUCguCAGCccccGGGAGCGGGucaucgcCGGCg -3'
miRNA:   3'- cCUAGguGUCG----UCCUCGUCCuu-----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 215136 0.68 0.919344
Target:  5'- gGGGUCCGC-GCGacGGGGgAGGcGACGaGCa -3'
miRNA:   3'- -CCUAGGUGuCGU--CCUCgUCC-UUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.