miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 229603 0.72 0.768417
Target:  5'- aGGggCCcggGCGGagaGGGAGCGGGGACcgaagGGCa -3'
miRNA:   3'- -CCuaGG---UGUCg--UCCUCGUCCUUG-----CCG- -5'
8943 3' -55.4 NC_002512.2 + 229550 0.72 0.749805
Target:  5'- cGGUCgGCGGaggAGGcGGCAGGAGgCGGCa -3'
miRNA:   3'- cCUAGgUGUCg--UCC-UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 229487 0.68 0.907269
Target:  5'- aGGAggCgagagGCGGCGGGgggagaggaggccGGCAGGAGgCGGCa -3'
miRNA:   3'- -CCUagG-----UGUCGUCC-------------UCGUCCUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 228992 0.7 0.821216
Target:  5'- cGGAaCCgugGCGGCGGGAcuaGCGGGAggagggugugcaGCGGUg -3'
miRNA:   3'- -CCUaGG---UGUCGUCCU---CGUCCU------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228417 0.78 0.432016
Target:  5'- gGGcgCUggGgGGCGGGGGCGGGAACGGg -3'
miRNA:   3'- -CCuaGG--UgUCGUCCUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 228208 0.68 0.907867
Target:  5'- cGAggCCGCGGUcgAGGccgggcgagacGGCGGGAAgGGCg -3'
miRNA:   3'- cCUa-GGUGUCG--UCC-----------UCGUCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 228158 0.89 0.099766
Target:  5'- aGGUCCACgcggAGCcGGAGCGGGAGCGGCa -3'
miRNA:   3'- cCUAGGUG----UCGuCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 228085 0.68 0.901791
Target:  5'- cGGGcugCaCACGGuCGGGAGCgAGGAG-GGCg -3'
miRNA:   3'- -CCUa--G-GUGUC-GUCCUCG-UCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 228052 0.69 0.888978
Target:  5'- uGAUCaCGguGguGGcAGCAGGggUGGg -3'
miRNA:   3'- cCUAG-GUguCguCC-UCGUCCuuGCCg -5'
8943 3' -55.4 NC_002512.2 + 228001 0.66 0.96853
Target:  5'- aGGG-CCGgAGCcggacGGGAcGCGGGAcgaggggcgaccggACGGCg -3'
miRNA:   3'- -CCUaGGUgUCG-----UCCU-CGUCCU--------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227996 0.66 0.969408
Target:  5'- aGGAgUgACAGaagagAGGAGagaaGGGAACGGUg -3'
miRNA:   3'- -CCUaGgUGUCg----UCCUCg---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227702 0.69 0.875303
Target:  5'- cGA-CgGCGGCGGGGGCGcGGuACGGUc -3'
miRNA:   3'- cCUaGgUGUCGUCCUCGU-CCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227605 0.74 0.662162
Target:  5'- ---cCCGCAGCGGccggaGGGCGGGcGGCGGCg -3'
miRNA:   3'- ccuaGGUGUCGUC-----CUCGUCC-UUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227522 0.66 0.969408
Target:  5'- gGGAgagUCCgGCGGCggacGGGGGgAGGAG-GGCg -3'
miRNA:   3'- -CCU---AGG-UGUCG----UCCUCgUCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 227439 0.67 0.941397
Target:  5'- cGGG-CCGCGGUcaccuucgcgcugccGGGGGagaggcCGGGGGCGGCc -3'
miRNA:   3'- -CCUaGGUGUCG---------------UCCUC------GUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227282 0.67 0.944064
Target:  5'- cGGAga-ACAGCaccAGGAGgGGGAGCGccaGCa -3'
miRNA:   3'- -CCUaggUGUCG---UCCUCgUCCUUGC---CG- -5'
8943 3' -55.4 NC_002512.2 + 227236 0.66 0.966413
Target:  5'- gGGAggCGCGGCGGacGGGCGGGcaucagGACGaGCg -3'
miRNA:   3'- -CCUagGUGUCGUC--CUCGUCC------UUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 227149 1.15 0.002223
Target:  5'- aGGAUCCACAGCAGGAGCAGGAACGGCa -3'
miRNA:   3'- -CCUAGGUGUCGUCCUCGUCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227087 0.68 0.901791
Target:  5'- uGGAgaCACAGguGGGGCGaacGAGgCGGCg -3'
miRNA:   3'- -CCUagGUGUCguCCUCGUc--CUU-GCCG- -5'
8943 3' -55.4 NC_002512.2 + 226590 0.74 0.642221
Target:  5'- aGGAgggCGCGGCccGGGGGaggaGGGGACGGCg -3'
miRNA:   3'- -CCUag-GUGUCG--UCCUCg---UCCUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.