miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 75587 0.66 0.526359
Target:  5'- -cGCGGUcgacguGGCgGCUUUCGCGCGCGu- -3'
miRNA:   3'- cuCGCCGu-----CCG-CGAGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 75638 0.75 0.152975
Target:  5'- -cGCGcacGCGGGCGCUCgCGCGCGCGu- -3'
miRNA:   3'- cuCGC---CGUCCGCGAGgGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 80225 0.72 0.263723
Target:  5'- gGAGCGGauaGGGCaGCUCCgGgaCGUGCGGGc -3'
miRNA:   3'- -CUCGCCg--UCCG-CGAGGgC--GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 80650 0.71 0.287533
Target:  5'- cGGCGGC-GGCGCcggguccgucggUCCCGCG-GCGGc -3'
miRNA:   3'- cUCGCCGuCCGCG------------AGGGCGCgCGCCu -5'
8943 5' -66 NC_002512.2 + 80697 0.79 0.092395
Target:  5'- cGAGCGGCguccggggggcgaGGGCGCgcgggCCCGCGgGCGGc -3'
miRNA:   3'- -CUCGCCG-------------UCCGCGa----GGGCGCgCGCCu -5'
8943 5' -66 NC_002512.2 + 80940 0.69 0.390855
Target:  5'- cGGCGGUAGGUGCcgUCCCgggucugGCGCGUGu- -3'
miRNA:   3'- cUCGCCGUCCGCG--AGGG-------CGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 81033 0.69 0.383967
Target:  5'- aGGCGGCAgccGGCGUUCCggcagcggUGCGCcCGGAc -3'
miRNA:   3'- cUCGCCGU---CCGCGAGG--------GCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 81950 0.67 0.473391
Target:  5'- gGAGgGGCcGGCGCgcggugagCCC-CGgGCGGGu -3'
miRNA:   3'- -CUCgCCGuCCGCGa-------GGGcGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 81986 0.72 0.252431
Target:  5'- uGGCGGCGGGgGCgUCUCGgGgGCGGu -3'
miRNA:   3'- cUCGCCGUCCgCG-AGGGCgCgCGCCu -5'
8943 5' -66 NC_002512.2 + 82325 0.66 0.529974
Target:  5'- aGGGCcGCGGGcCGC-CCCggcggguagcgguggGCGUGCGGGg -3'
miRNA:   3'- -CUCGcCGUCC-GCGaGGG---------------CGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 82385 0.76 0.145955
Target:  5'- -uGCGGCcGGCGgUggcUCCGCGCGCGGGg -3'
miRNA:   3'- cuCGCCGuCCGCgA---GGGCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 82427 0.66 0.561957
Target:  5'- -cGCGGCggaggggacgaggGGGCGUcggUCCCGCucccgaagGCGgGGAa -3'
miRNA:   3'- cuCGCCG-------------UCCGCG---AGGGCG--------CGCgCCU- -5'
8943 5' -66 NC_002512.2 + 83046 0.66 0.553677
Target:  5'- cGAGCacccugGGcCAGGCGaC-CUCGCGCGCGa- -3'
miRNA:   3'- -CUCG------CC-GUCCGC-GaGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 83971 0.66 0.526359
Target:  5'- cGGCGGCGGaUGC-CCgGCGCGgGGc -3'
miRNA:   3'- cUCGCCGUCcGCGaGGgCGCGCgCCu -5'
8943 5' -66 NC_002512.2 + 84555 0.68 0.46482
Target:  5'- -cGCGGCgAGGCGCUCgaccUCGaCGUaguuGCGGAa -3'
miRNA:   3'- cuCGCCG-UCCGCGAG----GGC-GCG----CGCCU- -5'
8943 5' -66 NC_002512.2 + 85580 0.68 0.431377
Target:  5'- gGAGCGGCcgggAGaGCGCgUCCGCGUuCGGGu -3'
miRNA:   3'- -CUCGCCG----UC-CGCGaGGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 86103 0.68 0.431377
Target:  5'- cGGCGGCucaUGgaCCCGgGCGCGGAg -3'
miRNA:   3'- cUCGCCGuccGCgaGGGCgCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 87854 0.69 0.376407
Target:  5'- -cGCGGCGGGuCGCcggCCCccgGC-CGCGGAa -3'
miRNA:   3'- cuCGCCGUCC-GCGa--GGG---CGcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 87982 0.66 0.581401
Target:  5'- gGGGCcGC-GGCGC-CCCGa-CGCGGAg -3'
miRNA:   3'- -CUCGcCGuCCGCGaGGGCgcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 88276 0.69 0.376407
Target:  5'- uGGCGGCAGGCGUg-UCGgGaCGCGGc -3'
miRNA:   3'- cUCGCCGUCCGCGagGGCgC-GCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.