miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 27597 0.77 0.120727
Target:  5'- cGGCGGCAcGGCGC-CCCGgucccacaGCGCGGAg -3'
miRNA:   3'- cUCGCCGU-CCGCGaGGGCg-------CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 27976 0.76 0.149427
Target:  5'- uGGGCGGcCGGGCGagauUCCgGCGCGgGGAg -3'
miRNA:   3'- -CUCGCC-GUCCGCg---AGGgCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 28060 0.66 0.54452
Target:  5'- -cGCGGaAGGaGCcCCCGgGCGCGGc -3'
miRNA:   3'- cuCGCCgUCCgCGaGGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 31728 0.68 0.431377
Target:  5'- -cGcCGGCcGGCGCcgacccggCCCGCGCGgGGc -3'
miRNA:   3'- cuC-GCCGuCCGCGa-------GGGCGCGCgCCu -5'
8943 5' -66 NC_002512.2 + 34901 0.68 0.468239
Target:  5'- gGAGCGGaCAGccauggacguccuauGCGCUCgauCCGCGaggGCGGAc -3'
miRNA:   3'- -CUCGCC-GUC---------------CGCGAG---GGCGCg--CGCCU- -5'
8943 5' -66 NC_002512.2 + 36889 0.71 0.293743
Target:  5'- aGGGCGGCGcccGCGgUCCagaGCGCGcCGGAg -3'
miRNA:   3'- -CUCGCCGUc--CGCgAGGg--CGCGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 38053 0.71 0.281426
Target:  5'- gGGGUGGgaGGGCGCaaggacCCCGCGCGCGu- -3'
miRNA:   3'- -CUCGCCg-UCCGCGa-----GGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 38936 0.76 0.142556
Target:  5'- -cGCGGCGGGCGC-CCgCGUGCGCccGGGu -3'
miRNA:   3'- cuCGCCGUCCGCGaGG-GCGCGCG--CCU- -5'
8943 5' -66 NC_002512.2 + 40402 0.66 0.553677
Target:  5'- uGGCGGUgacggccaGGGUGUagccgaUCUCGCGCGCGa- -3'
miRNA:   3'- cUCGCCG--------UCCGCG------AGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 42590 0.69 0.368949
Target:  5'- cGAGCGGCgGGGCGgaCCCGaaGCcCGGGg -3'
miRNA:   3'- -CUCGCCG-UCCGCgaGGGCg-CGcGCCU- -5'
8943 5' -66 NC_002512.2 + 44377 0.73 0.206478
Target:  5'- aGAGCGGCAGGC-C-CCCGCGCagccCGGc -3'
miRNA:   3'- -CUCGCCGUCCGcGaGGGCGCGc---GCCu -5'
8943 5' -66 NC_002512.2 + 44562 0.67 0.482041
Target:  5'- cGGGCGGCgacgcagacGGGCaGCUCCuCGCGCcccuccaGGAc -3'
miRNA:   3'- -CUCGCCG---------UCCG-CGAGG-GCGCGcg-----CCU- -5'
8943 5' -66 NC_002512.2 + 44888 0.68 0.423238
Target:  5'- cAGCGGCAccgggccgcaGCGCUCacgucgacggCCGCGCgGCGGAc -3'
miRNA:   3'- cUCGCCGUc---------CGCGAG----------GGCGCG-CGCCU- -5'
8943 5' -66 NC_002512.2 + 45268 0.66 0.54452
Target:  5'- -cGcCGGCgGGGCGCUCgCGCucgucuCGCGGGu -3'
miRNA:   3'- cuC-GCCG-UCCGCGAGgGCGc-----GCGCCU- -5'
8943 5' -66 NC_002512.2 + 45501 0.66 0.54452
Target:  5'- cGGCGGCGGccaCGCcgaaagcgCCCGCG-GCGGGc -3'
miRNA:   3'- cUCGCCGUCc--GCGa-------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 56274 0.73 0.21945
Target:  5'- -cGCGGCggAGGCGCUCCCGCuacucgacaugcugGCGgcgcCGGAg -3'
miRNA:   3'- cuCGCCG--UCCGCGAGGGCG--------------CGC----GCCU- -5'
8943 5' -66 NC_002512.2 + 58204 0.74 0.188483
Target:  5'- uGAGUgGGCGcGGCGCgcacCCCGCGCGCGu- -3'
miRNA:   3'- -CUCG-CCGU-CCGCGa---GGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 65455 0.68 0.439607
Target:  5'- cGAGCGGCuucccGGCGa-CCUgcaugGCGUGCGGGa -3'
miRNA:   3'- -CUCGCCGu----CCGCgaGGG-----CGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 71379 0.69 0.399384
Target:  5'- gGAGCGcuggcGCAGGcCGCggaagUCCUGCGCccccGCGGAg -3'
miRNA:   3'- -CUCGC-----CGUCC-GCG-----AGGGCGCG----CGCCU- -5'
8943 5' -66 NC_002512.2 + 73327 0.75 0.167941
Target:  5'- cGAGCGcaGCAGGCuCUCCCGCGuCGCGu- -3'
miRNA:   3'- -CUCGC--CGUCCGcGAGGGCGC-GCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.