miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 56274 0.73 0.21945
Target:  5'- -cGCGGCggAGGCGCUCCCGCuacucgacaugcugGCGgcgcCGGAg -3'
miRNA:   3'- cuCGCCG--UCCGCGAGGGCG--------------CGC----GCCU- -5'
8943 5' -66 NC_002512.2 + 153432 0.73 0.220933
Target:  5'- uGGCGGCAGGC-CggCCGgGCGCGGc -3'
miRNA:   3'- cUCGCCGUCCGcGagGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 90600 0.73 0.220933
Target:  5'- -cGgGGCGGGCGCcccccuucgccCCCGCGCGcCGGGc -3'
miRNA:   3'- cuCgCCGUCCGCGa----------GGGCGCGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 156516 0.73 0.22594
Target:  5'- uGGGCGGCgGGGCGCgggggUCCgGCG-GCGGGa -3'
miRNA:   3'- -CUCGCCG-UCCGCG-----AGGgCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 137211 0.73 0.22594
Target:  5'- uGGGCGGCGcgcccGGCGCgggcggccgUCCCGgaucCGCGCGGGu -3'
miRNA:   3'- -CUCGCCGU-----CCGCG---------AGGGC----GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 12404 0.73 0.22594
Target:  5'- cGGCGGCGGcGCcgggaucgcgaGCUCgCCGCGCGCGaGGc -3'
miRNA:   3'- cUCGCCGUC-CG-----------CGAG-GGCGCGCGC-CU- -5'
8943 5' -66 NC_002512.2 + 14732 0.73 0.236243
Target:  5'- aGGaCGGcCAGGUGCUcgucgccuccCCCGuCGCGCGGAc -3'
miRNA:   3'- cUC-GCC-GUCCGCGA----------GGGC-GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 143552 0.73 0.236243
Target:  5'- cGGCGGCc-GCGCgucucCCCGCGgGCGGGc -3'
miRNA:   3'- cUCGCCGucCGCGa----GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 153377 0.72 0.24154
Target:  5'- cGGCGGCuGGCGgUCCggaGCGaCGUGGAg -3'
miRNA:   3'- cUCGCCGuCCGCgAGGg--CGC-GCGCCU- -5'
8943 5' -66 NC_002512.2 + 144585 0.72 0.250772
Target:  5'- cGAGCGGCAGGCGUcgaUCCCcucgcacgagguccGCGcCGCGc- -3'
miRNA:   3'- -CUCGCCGUCCGCG---AGGG--------------CGC-GCGCcu -5'
8943 5' -66 NC_002512.2 + 81986 0.72 0.252431
Target:  5'- uGGCGGCGGGgGCgUCUCGgGgGCGGu -3'
miRNA:   3'- cUCGCCGUCCgCG-AGGGCgCgCGCCu -5'
8943 5' -66 NC_002512.2 + 117702 0.72 0.252431
Target:  5'- --cCGGguGGCcauGCUCCgCGCGUGCGGGc -3'
miRNA:   3'- cucGCCguCCG---CGAGG-GCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 80225 0.72 0.263723
Target:  5'- gGAGCGGauaGGGCaGCUCCgGgaCGUGCGGGc -3'
miRNA:   3'- -CUCGCCg--UCCG-CGAGGgC--GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 143586 0.71 0.275422
Target:  5'- gGAGaGGgAGGCGCcCuuGCGUGCGGGc -3'
miRNA:   3'- -CUCgCCgUCCGCGaGggCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 106221 0.71 0.275422
Target:  5'- -cGCGGCcauGGCGg-CgCGCGCGCGGGa -3'
miRNA:   3'- cuCGCCGu--CCGCgaGgGCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 38053 0.71 0.281426
Target:  5'- gGGGUGGgaGGGCGCaaggacCCCGCGCGCGu- -3'
miRNA:   3'- -CUCGCCg-UCCGCGa-----GGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 108330 0.71 0.281426
Target:  5'- -cGCGGCGGGCGgUCggCGCggcauGCGCGGAc -3'
miRNA:   3'- cuCGCCGUCCGCgAGg-GCG-----CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 175186 0.71 0.281426
Target:  5'- cGGCGGgGGGUuCUCCCGCGCGUu-- -3'
miRNA:   3'- cUCGCCgUCCGcGAGGGCGCGCGccu -5'
8943 5' -66 NC_002512.2 + 104848 0.71 0.287533
Target:  5'- gGAGCGGCGGGgagGgaCCuCGCGCaGCGGGc -3'
miRNA:   3'- -CUCGCCGUCCg--CgaGG-GCGCG-CGCCU- -5'
8943 5' -66 NC_002512.2 + 80650 0.71 0.287533
Target:  5'- cGGCGGC-GGCGCcggguccgucggUCCCGCG-GCGGc -3'
miRNA:   3'- cUCGCCGuCCGCG------------AGGGCGCgCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.