miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 113658 0.66 0.553677
Target:  5'- -cGCGGCcGGcCGCgagggUGCGCGCGGGu -3'
miRNA:   3'- cuCGCCGuCC-GCGagg--GCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 118790 0.66 0.553677
Target:  5'- -cGC-GCGGGUGCgcaCCCGCaUGCGGGa -3'
miRNA:   3'- cuCGcCGUCCGCGa--GGGCGcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 83046 0.66 0.553677
Target:  5'- cGAGCacccugGGcCAGGCGaC-CUCGCGCGCGa- -3'
miRNA:   3'- -CUCG------CC-GUCCGC-GaGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 185535 0.66 0.54452
Target:  5'- cGAGgGGguGGCcuaccgGC-CCCGCgGCGUGGc -3'
miRNA:   3'- -CUCgCCguCCG------CGaGGGCG-CGCGCCu -5'
8943 5' -66 NC_002512.2 + 28060 0.66 0.54452
Target:  5'- -cGCGGaAGGaGCcCCCGgGCGCGGc -3'
miRNA:   3'- cuCGCCgUCCgCGaGGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 45501 0.66 0.54452
Target:  5'- cGGCGGCGGccaCGCcgaaagcgCCCGCG-GCGGGc -3'
miRNA:   3'- cUCGCCGUCc--GCGa-------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 45268 0.66 0.54452
Target:  5'- -cGcCGGCgGGGCGCUCgCGCucgucuCGCGGGu -3'
miRNA:   3'- cuC-GCCG-UCCGCGAGgGCGc-----GCGCCU- -5'
8943 5' -66 NC_002512.2 + 183934 0.66 0.543607
Target:  5'- cAGCGGCucGGCugguucuGCUCCCGggaCGCGCGc- -3'
miRNA:   3'- cUCGCCGu-CCG-------CGAGGGC---GCGCGCcu -5'
8943 5' -66 NC_002512.2 + 101795 0.66 0.53905
Target:  5'- -cGCGGCGGaGCGCUUCCgaggaggcuuccuggGCGcCGCGa- -3'
miRNA:   3'- cuCGCCGUC-CGCGAGGG---------------CGC-GCGCcu -5'
8943 5' -66 NC_002512.2 + 130334 0.66 0.535413
Target:  5'- aAGCGGUucacGCGcCUCCUGCGCugcaucgaGCGGGa -3'
miRNA:   3'- cUCGCCGuc--CGC-GAGGGCGCG--------CGCCU- -5'
8943 5' -66 NC_002512.2 + 108120 0.66 0.535413
Target:  5'- cGGCGGUccGCGgUCCCGagagGCGCGcGAa -3'
miRNA:   3'- cUCGCCGucCGCgAGGGCg---CGCGC-CU- -5'
8943 5' -66 NC_002512.2 + 112111 0.66 0.535413
Target:  5'- -uGUGGUAGucgaagacGCcCUCCCGCaugGCGCGGAa -3'
miRNA:   3'- cuCGCCGUC--------CGcGAGGGCG---CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 149939 0.66 0.535413
Target:  5'- cGA-CGGCAGGCGgaCCCcCGCGCc-- -3'
miRNA:   3'- -CUcGCCGUCCGCgaGGGcGCGCGccu -5'
8943 5' -66 NC_002512.2 + 201884 0.66 0.535413
Target:  5'- cGGCGGCGGcuucucCGuCUCCC-CGCGcCGGAa -3'
miRNA:   3'- cUCGCCGUCc-----GC-GAGGGcGCGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 179312 0.66 0.535413
Target:  5'- cGGGCGGCgAGGCGggcagaUCCUGCaGCGCc-- -3'
miRNA:   3'- -CUCGCCG-UCCGCg-----AGGGCG-CGCGccu -5'
8943 5' -66 NC_002512.2 + 101755 0.66 0.535413
Target:  5'- uGGUGGCccGGGCGCUCC-GuCG-GCGGGa -3'
miRNA:   3'- cUCGCCG--UCCGCGAGGgC-GCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 144261 0.66 0.535413
Target:  5'- cGGCGGCAgcgGGCGaagUCCCagagGCG-GCGGAg -3'
miRNA:   3'- cUCGCCGU---CCGCg--AGGG----CGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 128824 0.66 0.532691
Target:  5'- cGGCGGCGcugucGGCGCagCUGCaccgcucgggcgccGCGCGGGc -3'
miRNA:   3'- cUCGCCGU-----CCGCGagGGCG--------------CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 22955 0.66 0.531785
Target:  5'- -cGCGGCGGuGUGCcagccguucaucaCCCGCG-GCGGGa -3'
miRNA:   3'- cuCGCCGUC-CGCGa------------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 82325 0.66 0.529974
Target:  5'- aGGGCcGCGGGcCGC-CCCggcggguagcgguggGCGUGCGGGg -3'
miRNA:   3'- -CUCGcCGUCC-GCGaGGG---------------CGCGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.