miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 154695 0.66 0.526359
Target:  5'- cGAGCGGCcguccGGCGUcgagCgGCGCGaCGGAa -3'
miRNA:   3'- -CUCGCCGu----CCGCGag--GgCGCGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 160847 0.66 0.526359
Target:  5'- cGGCGGCgcuGGGCGCagUCGCagagGgGCGGAc -3'
miRNA:   3'- cUCGCCG---UCCGCGagGGCG----CgCGCCU- -5'
8943 5' -66 NC_002512.2 + 205082 0.66 0.526359
Target:  5'- aGAGCGGC-GGCGaUCCguccucggggggCGCGCcCGGAc -3'
miRNA:   3'- -CUCGCCGuCCGCgAGG------------GCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 123713 0.66 0.526359
Target:  5'- cAGCGGUuccGGGUGgaCCUGUGCuCGGAc -3'
miRNA:   3'- cUCGCCG---UCCGCgaGGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 121889 0.66 0.526359
Target:  5'- -cGCGGgGGaCGCUCggcgaCGCGCGgGGAg -3'
miRNA:   3'- cuCGCCgUCcGCGAGg----GCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 96283 0.66 0.526359
Target:  5'- aGGCGGgGGG-GCUgCCGCGggccgccgcCGCGGGc -3'
miRNA:   3'- cUCGCCgUCCgCGAgGGCGC---------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 75587 0.66 0.526359
Target:  5'- -cGCGGUcgacguGGCgGCUUUCGCGCGCGu- -3'
miRNA:   3'- cuCGCCGu-----CCG-CGAGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 83971 0.66 0.526359
Target:  5'- cGGCGGCGGaUGC-CCgGCGCGgGGc -3'
miRNA:   3'- cUCGCCGUCcGCGaGGgCGCGCgCCu -5'
8943 5' -66 NC_002512.2 + 102322 0.66 0.525457
Target:  5'- cGAGCGGCuGGGCcgGCUCCgGUacgacaaGCGCGu- -3'
miRNA:   3'- -CUCGCCG-UCCG--CGAGGgCG-------CGCGCcu -5'
8943 5' -66 NC_002512.2 + 99900 0.66 0.523655
Target:  5'- -cGCGGCGccgccGGCGCUCCCggcgguguucgaucGCGuCGCaGAc -3'
miRNA:   3'- cuCGCCGU-----CCGCGAGGG--------------CGC-GCGcCU- -5'
8943 5' -66 NC_002512.2 + 219430 0.66 0.523655
Target:  5'- gGGGCGGCGGcggccuccuccGCGCcCCCGUGCccgacggcgacgacGCGGu -3'
miRNA:   3'- -CUCGCCGUC-----------CGCGaGGGCGCG--------------CGCCu -5'
8943 5' -66 NC_002512.2 + 133403 0.67 0.520955
Target:  5'- uGGGCGacGCcauGGCGC-CCCGCGgacgaaaaacccggaCGCGGAc -3'
miRNA:   3'- -CUCGC--CGu--CCGCGaGGGCGC---------------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 170202 0.67 0.517364
Target:  5'- cGGCcaugaGCGGGUGCUCCuCGCGgUGCGcGAa -3'
miRNA:   3'- cUCGc----CGUCCGCGAGG-GCGC-GCGC-CU- -5'
8943 5' -66 NC_002512.2 + 110285 0.67 0.517364
Target:  5'- cGAGCGGCgaGGGCGacacugCUgGCGCGaGGGg -3'
miRNA:   3'- -CUCGCCG--UCCGCga----GGgCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 110531 0.67 0.517364
Target:  5'- cGAGCGaGUcgccgugaccGGCGUUUCCGCccccGCGCGGGa -3'
miRNA:   3'- -CUCGC-CGu---------CCGCGAGGGCG----CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 149429 0.67 0.517364
Target:  5'- -cGCGGCGGGgGCgggCGCGgGgGGAg -3'
miRNA:   3'- cuCGCCGUCCgCGaggGCGCgCgCCU- -5'
8943 5' -66 NC_002512.2 + 128261 0.67 0.511997
Target:  5'- cGAGCGGCGacucgcgucccGGCGCcgggccgacggccgCCCGCacgacCGCGGGg -3'
miRNA:   3'- -CUCGCCGU-----------CCGCGa-------------GGGCGc----GCGCCU- -5'
8943 5' -66 NC_002512.2 + 120794 0.67 0.511997
Target:  5'- gGGGCGGCGGGacggcggcggucucuCGgaCCCGgGaCGCGGc -3'
miRNA:   3'- -CUCGCCGUCC---------------GCgaGGGCgC-GCGCCu -5'
8943 5' -66 NC_002512.2 + 18534 0.67 0.509322
Target:  5'- cGGGCGGuCAGGcCGCgcgcgucccccagcgCCCGgGCcCGGAc -3'
miRNA:   3'- -CUCGCC-GUCC-GCGa--------------GGGCgCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 129318 0.67 0.508431
Target:  5'- cGAGCGcCcGGCGCUUCUGCGUcaCGGAc -3'
miRNA:   3'- -CUCGCcGuCCGCGAGGGCGCGc-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.