Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8943 | 5' | -66 | NC_002512.2 | + | 227192 | 1.07 | 0.000847 |
Target: 5'- gGAGCGGCAGGCGCUCCCGCGCGCGGAc -3' miRNA: 3'- -CUCGCCGUCCGCGAGGGCGCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 80697 | 0.79 | 0.092395 |
Target: 5'- cGAGCGGCguccggggggcgaGGGCGCgcgggCCCGCGgGCGGc -3' miRNA: 3'- -CUCGCCG-------------UCCGCGa----GGGCGCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 27597 | 0.77 | 0.120727 |
Target: 5'- cGGCGGCAcGGCGC-CCCGgucccacaGCGCGGAg -3' miRNA: 3'- cUCGCCGU-CCGCGaGGGCg-------CGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 95790 | 0.77 | 0.126625 |
Target: 5'- cGAGCGGUAGGCGC--CgGgGCGCGGAu -3' miRNA: 3'- -CUCGCCGUCCGCGagGgCgCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 130162 | 0.77 | 0.126625 |
Target: 5'- cGGCGGCGGGCcggCCCGCgacgGCGCGGAc -3' miRNA: 3'- cUCGCCGUCCGcgaGGGCG----CGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 116741 | 0.76 | 0.13279 |
Target: 5'- -cGCGGCGaggccGGCGC-CCCGCGCGCGu- -3' miRNA: 3'- cuCGCCGU-----CCGCGaGGGCGCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 38936 | 0.76 | 0.142556 |
Target: 5'- -cGCGGCGGGCGC-CCgCGUGCGCccGGGu -3' miRNA: 3'- cuCGCCGUCCGCGaGG-GCGCGCG--CCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 82385 | 0.76 | 0.145955 |
Target: 5'- -uGCGGCcGGCGgUggcUCCGCGCGCGGGg -3' miRNA: 3'- cuCGCCGuCCGCgA---GGGCGCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 27976 | 0.76 | 0.149427 |
Target: 5'- uGGGCGGcCGGGCGagauUCCgGCGCGgGGAg -3' miRNA: 3'- -CUCGCC-GUCCGCg---AGGgCGCGCgCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 75638 | 0.75 | 0.152975 |
Target: 5'- -cGCGcacGCGGGCGCUCgCGCGCGCGu- -3' miRNA: 3'- cuCGC---CGUCCGCGAGgGCGCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 73327 | 0.75 | 0.167941 |
Target: 5'- cGAGCGcaGCAGGCuCUCCCGCGuCGCGu- -3' miRNA: 3'- -CUCGC--CGUCCGcGAGGGCGC-GCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 112162 | 0.74 | 0.180013 |
Target: 5'- cGGCGaGCcGGCGCUcgagCCCGCacGCGCGGAg -3' miRNA: 3'- cUCGC-CGuCCGCGA----GGGCG--CGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 139255 | 0.74 | 0.184205 |
Target: 5'- -cGCGGCgccGGGuCGCgccgCCCgGCGCGCGGGg -3' miRNA: 3'- cuCGCCG---UCC-GCGa---GGG-CGCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 133886 | 0.74 | 0.188483 |
Target: 5'- gGAGCGGCucggccGGCGgUCCCGgGCGCuGGc -3' miRNA: 3'- -CUCGCCGu-----CCGCgAGGGCgCGCG-CCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 221516 | 0.74 | 0.188483 |
Target: 5'- -cGCGGCGccgcggauccucGGCGCUCCCGCcuaccgcuaCGCGGAc -3' miRNA: 3'- cuCGCCGU------------CCGCGAGGGCGc--------GCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 58204 | 0.74 | 0.188483 |
Target: 5'- uGAGUgGGCGcGGCGCgcacCCCGCGCGCGu- -3' miRNA: 3'- -CUCG-CCGU-CCGCGa---GGGCGCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 111545 | 0.74 | 0.190218 |
Target: 5'- aAGCGGCagGGGCGCUCCaccaGCGCGUccgucccguccacccGGAu -3' miRNA: 3'- cUCGCCG--UCCGCGAGGg---CGCGCG---------------CCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 119327 | 0.74 | 0.201844 |
Target: 5'- --cCGGCAGGaC-CUCCCGCGCGgGGGc -3' miRNA: 3'- cucGCCGUCC-GcGAGGGCGCGCgCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 201626 | 0.74 | 0.201844 |
Target: 5'- cGAGCGGUAGGCGCcgucguaCUCGCgGCGCGa- -3' miRNA: 3'- -CUCGCCGUCCGCGa------GGGCG-CGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 44377 | 0.73 | 0.206478 |
Target: 5'- aGAGCGGCAGGC-C-CCCGCGCagccCGGc -3' miRNA: 3'- -CUCGCCGUCCGcGaGGGCGCGc---GCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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