miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 80225 0.72 0.263723
Target:  5'- gGAGCGGauaGGGCaGCUCCgGgaCGUGCGGGc -3'
miRNA:   3'- -CUCGCCg--UCCG-CGAGGgC--GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 111545 0.74 0.190218
Target:  5'- aAGCGGCagGGGCGCUCCaccaGCGCGUccgucccguccacccGGAu -3'
miRNA:   3'- cUCGCCG--UCCGCGAGGg---CGCGCG---------------CCU- -5'
8943 5' -66 NC_002512.2 + 44377 0.73 0.206478
Target:  5'- aGAGCGGCAGGC-C-CCCGCGCagccCGGc -3'
miRNA:   3'- -CUCGCCGUCCGcGaGGGCGCGc---GCCu -5'
8943 5' -66 NC_002512.2 + 56274 0.73 0.21945
Target:  5'- -cGCGGCggAGGCGCUCCCGCuacucgacaugcugGCGgcgcCGGAg -3'
miRNA:   3'- cuCGCCG--UCCGCGAGGGCG--------------CGC----GCCU- -5'
8943 5' -66 NC_002512.2 + 12404 0.73 0.22594
Target:  5'- cGGCGGCGGcGCcgggaucgcgaGCUCgCCGCGCGCGaGGc -3'
miRNA:   3'- cUCGCCGUC-CG-----------CGAG-GGCGCGCGC-CU- -5'
8943 5' -66 NC_002512.2 + 137211 0.73 0.22594
Target:  5'- uGGGCGGCGcgcccGGCGCgggcggccgUCCCGgaucCGCGCGGGu -3'
miRNA:   3'- -CUCGCCGU-----CCGCG---------AGGGC----GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 14732 0.73 0.236243
Target:  5'- aGGaCGGcCAGGUGCUcgucgccuccCCCGuCGCGCGGAc -3'
miRNA:   3'- cUC-GCC-GUCCGCGA----------GGGC-GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 81986 0.72 0.252431
Target:  5'- uGGCGGCGGGgGCgUCUCGgGgGCGGu -3'
miRNA:   3'- cUCGCCGUCCgCG-AGGGCgCgCGCCu -5'
8943 5' -66 NC_002512.2 + 117702 0.72 0.252431
Target:  5'- --cCGGguGGCcauGCUCCgCGCGUGCGGGc -3'
miRNA:   3'- cucGCCguCCG---CGAGG-GCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 133886 0.74 0.188483
Target:  5'- gGAGCGGCucggccGGCGgUCCCGgGCGCuGGc -3'
miRNA:   3'- -CUCGCCGu-----CCGCgAGGGCgCGCG-CCu -5'
8943 5' -66 NC_002512.2 + 58204 0.74 0.188483
Target:  5'- uGAGUgGGCGcGGCGCgcacCCCGCGCGCGu- -3'
miRNA:   3'- -CUCG-CCGU-CCGCGa---GGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 139255 0.74 0.184205
Target:  5'- -cGCGGCgccGGGuCGCgccgCCCgGCGCGCGGGg -3'
miRNA:   3'- cuCGCCG---UCC-GCGa---GGG-CGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 27597 0.77 0.120727
Target:  5'- cGGCGGCAcGGCGC-CCCGgucccacaGCGCGGAg -3'
miRNA:   3'- cUCGCCGU-CCGCGaGGGCg-------CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 130162 0.77 0.126625
Target:  5'- cGGCGGCGGGCcggCCCGCgacgGCGCGGAc -3'
miRNA:   3'- cUCGCCGUCCGcgaGGGCG----CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 116741 0.76 0.13279
Target:  5'- -cGCGGCGaggccGGCGC-CCCGCGCGCGu- -3'
miRNA:   3'- cuCGCCGU-----CCGCGaGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 38936 0.76 0.142556
Target:  5'- -cGCGGCGGGCGC-CCgCGUGCGCccGGGu -3'
miRNA:   3'- cuCGCCGUCCGCGaGG-GCGCGCG--CCU- -5'
8943 5' -66 NC_002512.2 + 82385 0.76 0.145955
Target:  5'- -uGCGGCcGGCGgUggcUCCGCGCGCGGGg -3'
miRNA:   3'- cuCGCCGuCCGCgA---GGGCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 27976 0.76 0.149427
Target:  5'- uGGGCGGcCGGGCGagauUCCgGCGCGgGGAg -3'
miRNA:   3'- -CUCGCC-GUCCGCg---AGGgCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 75638 0.75 0.152975
Target:  5'- -cGCGcacGCGGGCGCUCgCGCGCGCGu- -3'
miRNA:   3'- cuCGC---CGUCCGCGAGgGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 73327 0.75 0.167941
Target:  5'- cGAGCGcaGCAGGCuCUCCCGCGuCGCGu- -3'
miRNA:   3'- -CUCGC--CGUCCGcGAGGGCGC-GCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.