miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 2301 0.69 0.40724
Target:  5'- cGGGUGGCGGG-GCUCugCUGCGCcgGCGGu -3'
miRNA:   3'- -CUCGCCGUCCgCGAG--GGCGCG--CGCCu -5'
8943 5' -66 NC_002512.2 + 2463 0.7 0.361593
Target:  5'- -cGCGGCc--CGCgCCCGCGCGCGaGAg -3'
miRNA:   3'- cuCGCCGuccGCGaGGGCGCGCGC-CU- -5'
8943 5' -66 NC_002512.2 + 2805 0.71 0.313001
Target:  5'- cGGCGGCcGGCgGgaCCCG-GCGCGGGc -3'
miRNA:   3'- cUCGCCGuCCG-CgaGGGCgCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 4852 0.69 0.399384
Target:  5'- -cGCGGCcaucgcGGgGUUCgCCGCGUGCGGc -3'
miRNA:   3'- cuCGCCGu-----CCgCGAG-GGCGCGCGCCu -5'
8943 5' -66 NC_002512.2 + 4893 0.66 0.581401
Target:  5'- gGAGCGGCgacgggaagaGGGCGC-CgCCGCcGCcgcccaGCGGGu -3'
miRNA:   3'- -CUCGCCG----------UCCGCGaG-GGCG-CG------CGCCU- -5'
8943 5' -66 NC_002512.2 + 7259 0.69 0.398604
Target:  5'- gGAGCGGCguccgucgggaucGGGCGCgaggcCCCGgGgGcCGGAc -3'
miRNA:   3'- -CUCGCCG-------------UCCGCGa----GGGCgCgC-GCCU- -5'
8943 5' -66 NC_002512.2 + 8037 0.68 0.456331
Target:  5'- aGAGguccCGGUcccgAGGCGCcCCCGCGgGuCGGAc -3'
miRNA:   3'- -CUC----GCCG----UCCGCGaGGGCGCgC-GCCU- -5'
8943 5' -66 NC_002512.2 + 9471 0.7 0.319629
Target:  5'- uGGCcguaGGCGGGCGggCCCGCGagcgGCGGGu -3'
miRNA:   3'- cUCG----CCGUCCGCgaGGGCGCg---CGCCU- -5'
8943 5' -66 NC_002512.2 + 9750 0.68 0.456331
Target:  5'- gGGGCGGCGGaGCcggacccgccGC-CCCGCGUgGCGGc -3'
miRNA:   3'- -CUCGCCGUC-CG----------CGaGGGCGCG-CGCCu -5'
8943 5' -66 NC_002512.2 + 12404 0.73 0.22594
Target:  5'- cGGCGGCGGcGCcgggaucgcgaGCUCgCCGCGCGCGaGGc -3'
miRNA:   3'- cUCGCCGUC-CG-----------CGAG-GGCGCGCGC-CU- -5'
8943 5' -66 NC_002512.2 + 12580 0.66 0.581401
Target:  5'- -cGCuGGCGGaGCcgaucauCUCCCgGCGCGCGGu -3'
miRNA:   3'- cuCG-CCGUC-CGc------GAGGG-CGCGCGCCu -5'
8943 5' -66 NC_002512.2 + 13698 0.69 0.383967
Target:  5'- cGGCGGUgaucacGGGCGCgaUCCCGaGaCGCGGGa -3'
miRNA:   3'- cUCGCCG------UCCGCG--AGGGCgC-GCGCCU- -5'
8943 5' -66 NC_002512.2 + 14050 0.69 0.40724
Target:  5'- aGGCGGCGGcGCGUUCCgGC-CG-GGAg -3'
miRNA:   3'- cUCGCCGUC-CGCGAGGgCGcGCgCCU- -5'
8943 5' -66 NC_002512.2 + 14732 0.73 0.236243
Target:  5'- aGGaCGGcCAGGUGCUcgucgccuccCCCGuCGCGCGGAc -3'
miRNA:   3'- cUC-GCC-GUCCGCGA----------GGGC-GCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 17821 0.7 0.325684
Target:  5'- aGGCGGCGGaugcccaggguguGCGCcagcagcuccUCCCGgGCGCGGu -3'
miRNA:   3'- cUCGCCGUC-------------CGCG----------AGGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 18534 0.67 0.509322
Target:  5'- cGGGCGGuCAGGcCGCgcgcgucccccagcgCCCGgGCcCGGAc -3'
miRNA:   3'- -CUCGCC-GUCC-GCGa--------------GGGCgCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 18696 0.69 0.40724
Target:  5'- uGGGCGGCGGGCaC-CCCGagcaGgGCGGc -3'
miRNA:   3'- -CUCGCCGUCCGcGaGGGCg---CgCGCCu -5'
8943 5' -66 NC_002512.2 + 21078 0.66 0.560114
Target:  5'- cGGGCGGCGGuccCGCUCCgggGCGaccgccgucucagaCGCGGAc -3'
miRNA:   3'- -CUCGCCGUCc--GCGAGGg--CGC--------------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 21214 0.67 0.499564
Target:  5'- cAGCGGCccccGGGaCGCcgCCCGgG-GCGGAg -3'
miRNA:   3'- cUCGCCG----UCC-GCGa-GGGCgCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 22955 0.66 0.531785
Target:  5'- -cGCGGCGGuGUGCcagccguucaucaCCCGCG-GCGGGa -3'
miRNA:   3'- cuCGCCGUC-CGCGa------------GGGCGCgCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.