miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 21078 0.66 0.560114
Target:  5'- cGGGCGGCGGuccCGCUCCgggGCGaccgccgucucagaCGCGGAc -3'
miRNA:   3'- -CUCGCCGUCc--GCGAGGg--CGC--------------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 82325 0.66 0.529974
Target:  5'- aGGGCcGCGGGcCGC-CCCggcggguagcgguggGCGUGCGGGg -3'
miRNA:   3'- -CUCGcCGUCC-GCGaGGG---------------CGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 155364 0.66 0.572122
Target:  5'- cGAGCGGCgcucgaggucgGGGCgGCggcgCCgGCGggcgauCGCGGAg -3'
miRNA:   3'- -CUCGCCG-----------UCCG-CGa---GGgCGC------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 102322 0.66 0.525457
Target:  5'- cGAGCGGCuGGGCcgGCUCCgGUacgacaaGCGCGu- -3'
miRNA:   3'- -CUCGCCG-UCCG--CGAGGgCG-------CGCGCcu -5'
8943 5' -66 NC_002512.2 + 97394 0.66 0.553677
Target:  5'- cGGgGGCGGGCGCga-CGa-CGCGGAg -3'
miRNA:   3'- cUCgCCGUCCGCGaggGCgcGCGCCU- -5'
8943 5' -66 NC_002512.2 + 130334 0.66 0.535413
Target:  5'- aAGCGGUucacGCGcCUCCUGCGCugcaucgaGCGGGa -3'
miRNA:   3'- cUCGCCGuc--CGC-GAGGGCGCG--------CGCCU- -5'
8943 5' -66 NC_002512.2 + 45268 0.66 0.54452
Target:  5'- -cGcCGGCgGGGCGCUCgCGCucgucuCGCGGGu -3'
miRNA:   3'- cuC-GCCG-UCCGCGAGgGCGc-----GCGCCU- -5'
8943 5' -66 NC_002512.2 + 101755 0.66 0.535413
Target:  5'- uGGUGGCccGGGCGCUCC-GuCG-GCGGGa -3'
miRNA:   3'- cUCGCCG--UCCGCGAGGgC-GCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 83046 0.66 0.553677
Target:  5'- cGAGCacccugGGcCAGGCGaC-CUCGCGCGCGa- -3'
miRNA:   3'- -CUCG------CC-GUCCGC-GaGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 45501 0.66 0.54452
Target:  5'- cGGCGGCGGccaCGCcgaaagcgCCCGCG-GCGGGc -3'
miRNA:   3'- cUCGCCGUCc--GCGa-------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 123713 0.66 0.526359
Target:  5'- cAGCGGUuccGGGUGgaCCUGUGCuCGGAc -3'
miRNA:   3'- cUCGCCG---UCCGCgaGGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 28060 0.66 0.54452
Target:  5'- -cGCGGaAGGaGCcCCCGgGCGCGGc -3'
miRNA:   3'- cuCGCCgUCCgCGaGGGCgCGCGCCu -5'
8943 5' -66 NC_002512.2 + 22955 0.66 0.531785
Target:  5'- -cGCGGCGGuGUGCcagccguucaucaCCCGCG-GCGGGa -3'
miRNA:   3'- cuCGCCGUC-CGCGa------------GGGCGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 96283 0.66 0.526359
Target:  5'- aGGCGGgGGG-GCUgCCGCGggccgccgcCGCGGGc -3'
miRNA:   3'- cUCGCCgUCCgCGAgGGCGC---------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 137992 0.66 0.562879
Target:  5'- cGAGCgGGCcGuGCGCcgcgccgccgCCCGCGC-CGGAc -3'
miRNA:   3'- -CUCG-CCGuC-CGCGa---------GGGCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 82427 0.66 0.561957
Target:  5'- -cGCGGCggaggggacgaggGGGCGUcggUCCCGCucccgaagGCGgGGAa -3'
miRNA:   3'- cuCGCCG-------------UCCGCG---AGGGCG--------CGCgCCU- -5'
8943 5' -66 NC_002512.2 + 121889 0.66 0.526359
Target:  5'- -cGCGGgGGaCGCUCggcgaCGCGCGgGGAg -3'
miRNA:   3'- cuCGCCgUCcGCGAGg----GCGCGCgCCU- -5'
8943 5' -66 NC_002512.2 + 83971 0.66 0.526359
Target:  5'- cGGCGGCGGaUGC-CCgGCGCGgGGc -3'
miRNA:   3'- cUCGCCGUCcGCGaGGgCGCGCgCCu -5'
8943 5' -66 NC_002512.2 + 40402 0.66 0.553677
Target:  5'- uGGCGGUgacggccaGGGUGUagccgaUCUCGCGCGCGa- -3'
miRNA:   3'- cUCGCCG--------UCCGCG------AGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 75587 0.66 0.526359
Target:  5'- -cGCGGUcgacguGGCgGCUUUCGCGCGCGu- -3'
miRNA:   3'- cuCGCCGu-----CCG-CGAGGGCGCGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.