miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 5' -66 NC_002512.2 + 227793 0.68 0.46482
Target:  5'- -cGCGGCcguaccgccCGCUCCCGCccgGCGUGGAc -3'
miRNA:   3'- cuCGCCGucc------GCGAGGGCG---CGCGCCU- -5'
8943 5' -66 NC_002512.2 + 227192 1.07 0.000847
Target:  5'- gGAGCGGCAGGCGCUCCCGCGCGCGGAc -3'
miRNA:   3'- -CUCGCCGUCCGCGAGGGCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 226685 0.66 0.581401
Target:  5'- uGAGCGcCGGGcCGUcgCCCGCG-GCGGc -3'
miRNA:   3'- -CUCGCcGUCC-GCGa-GGGCGCgCGCCu -5'
8943 5' -66 NC_002512.2 + 226471 0.71 0.302613
Target:  5'- aGGCGGgaggaggccggggccCGGGCGCUCCCcuCGCcGCGGGu -3'
miRNA:   3'- cUCGCC---------------GUCCGCGAGGGc-GCG-CGCCU- -5'
8943 5' -66 NC_002512.2 + 223853 0.68 0.431377
Target:  5'- aGAGaGGCcGGuUGUUCCCGUGCGCGa- -3'
miRNA:   3'- -CUCgCCGuCC-GCGAGGGCGCGCGCcu -5'
8943 5' -66 NC_002512.2 + 222358 0.66 0.572122
Target:  5'- gGAGCGGCAcGGgGCcgccuUCCC-CG-GCGGGc -3'
miRNA:   3'- -CUCGCCGU-CCgCG-----AGGGcGCgCGCCU- -5'
8943 5' -66 NC_002512.2 + 221516 0.74 0.188483
Target:  5'- -cGCGGCGccgcggauccucGGCGCUCCCGCcuaccgcuaCGCGGAc -3'
miRNA:   3'- cuCGCCGU------------CCGCGAGGGCGc--------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 219430 0.66 0.523655
Target:  5'- gGGGCGGCGGcggccuccuccGCGCcCCCGUGCccgacggcgacgacGCGGu -3'
miRNA:   3'- -CUCGCCGUC-----------CGCGaGGGCGCG--------------CGCCu -5'
8943 5' -66 NC_002512.2 + 219054 0.68 0.456331
Target:  5'- -cGCGGCGcGGgGCUCCCcGCGgGCu-- -3'
miRNA:   3'- cuCGCCGU-CCgCGAGGG-CGCgCGccu -5'
8943 5' -66 NC_002512.2 + 214928 0.66 0.572122
Target:  5'- -cGCGGCcgcGGCuucgucCUCCCGUGgcCGCGGAc -3'
miRNA:   3'- cuCGCCGu--CCGc-----GAGGGCGC--GCGCCU- -5'
8943 5' -66 NC_002512.2 + 211788 0.69 0.399384
Target:  5'- cGGGUGGCcgcGGGgGCcgUCCCGC-CGCGGc -3'
miRNA:   3'- -CUCGCCG---UCCgCG--AGGGCGcGCGCCu -5'
8943 5' -66 NC_002512.2 + 211328 0.7 0.340143
Target:  5'- uGGCGGUccgggcccGGGCGCUgggggaCGCGCGCGGc -3'
miRNA:   3'- cUCGCCG--------UCCGCGAgg----GCGCGCGCCu -5'
8943 5' -66 NC_002512.2 + 208883 0.67 0.499564
Target:  5'- gGGGaCGGgAGGgGCcgggaaUCCC-CGCGCGGGa -3'
miRNA:   3'- -CUC-GCCgUCCgCG------AGGGcGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 207881 0.69 0.40724
Target:  5'- gGGGaCGGCuucuGGCGCUCUCGgCGguggcuccucgaCGCGGAg -3'
miRNA:   3'- -CUC-GCCGu---CCGCGAGGGC-GC------------GCGCCU- -5'
8943 5' -66 NC_002512.2 + 205082 0.66 0.526359
Target:  5'- aGAGCGGC-GGCGaUCCguccucggggggCGCGCcCGGAc -3'
miRNA:   3'- -CUCGCCGuCCGCgAGG------------GCGCGcGCCU- -5'
8943 5' -66 NC_002512.2 + 204675 0.69 0.399384
Target:  5'- cGGCGGCu--CGCUCCCGCuccgucGCgGCGGAc -3'
miRNA:   3'- cUCGCCGuccGCGAGGGCG------CG-CGCCU- -5'
8943 5' -66 NC_002512.2 + 202390 0.7 0.340143
Target:  5'- -uGCGGUcuuuuucuGGCcuuuuuUUCCCGCGCGCGGAa -3'
miRNA:   3'- cuCGCCGu-------CCGc-----GAGGGCGCGCGCCU- -5'
8943 5' -66 NC_002512.2 + 202156 0.71 0.306477
Target:  5'- gGGGCGGguGGuCGUUCCCGUggucGUGaCGGGa -3'
miRNA:   3'- -CUCGCCguCC-GCGAGGGCG----CGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 201884 0.66 0.535413
Target:  5'- cGGCGGCGGcuucucCGuCUCCC-CGCGcCGGAa -3'
miRNA:   3'- cUCGCCGUCc-----GC-GAGGGcGCGC-GCCU- -5'
8943 5' -66 NC_002512.2 + 201626 0.74 0.201844
Target:  5'- cGAGCGGUAGGCGCcgucguaCUCGCgGCGCGa- -3'
miRNA:   3'- -CUCGCCGUCCGCGa------GGGCG-CGCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.