Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8943 | 5' | -66 | NC_002512.2 | + | 226685 | 0.66 | 0.581401 |
Target: 5'- uGAGCGcCGGGcCGUcgCCCGCG-GCGGc -3' miRNA: 3'- -CUCGCcGUCC-GCGa-GGGCGCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 201884 | 0.66 | 0.535413 |
Target: 5'- cGGCGGCGGcuucucCGuCUCCC-CGCGcCGGAa -3' miRNA: 3'- cUCGCCGUCc-----GC-GAGGGcGCGC-GCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 149939 | 0.66 | 0.535413 |
Target: 5'- cGA-CGGCAGGCGgaCCCcCGCGCc-- -3' miRNA: 3'- -CUcGCCGUCCGCgaGGGcGCGCGccu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 227192 | 1.07 | 0.000847 |
Target: 5'- gGAGCGGCAGGCGCUCCCGCGCGCGGAc -3' miRNA: 3'- -CUCGCCGUCCGCGAGGGCGCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 147643 | 0.66 | 0.572122 |
Target: 5'- cGGCGGCGGcCGCUCCCGCuacCGUc-- -3' miRNA: 3'- cUCGCCGUCcGCGAGGGCGc--GCGccu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 222358 | 0.66 | 0.572122 |
Target: 5'- gGAGCGGCAcGGgGCcgccuUCCC-CG-GCGGGc -3' miRNA: 3'- -CUCGCCGU-CCgCG-----AGGGcGCgCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 157157 | 0.66 | 0.562879 |
Target: 5'- cGGGCGGCGGGCcggGCgg-CGUGgGCGGc -3' miRNA: 3'- -CUCGCCGUCCG---CGaggGCGCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 145144 | 0.66 | 0.562879 |
Target: 5'- uGGCcuacaGCAcGGCGCUgUCGCGCgaGCGGAu -3' miRNA: 3'- cUCGc----CGU-CCGCGAgGGCGCG--CGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 156459 | 0.66 | 0.553677 |
Target: 5'- gGGGCGGCGGG-GgaCUCGgGgGCGGc -3' miRNA: 3'- -CUCGCCGUCCgCgaGGGCgCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 101795 | 0.66 | 0.53905 |
Target: 5'- -cGCGGCGGaGCGCUUCCgaggaggcuuccuggGCGcCGCGa- -3' miRNA: 3'- cuCGCCGUC-CGCGAGGG---------------CGC-GCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 118790 | 0.66 | 0.553677 |
Target: 5'- -cGC-GCGGGUGCgcaCCCGCaUGCGGGa -3' miRNA: 3'- cuCGcCGUCCGCGa--GGGCGcGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 113658 | 0.66 | 0.553677 |
Target: 5'- -cGCGGCcGGcCGCgagggUGCGCGCGGGu -3' miRNA: 3'- cuCGCCGuCC-GCGagg--GCGCGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 91892 | 0.66 | 0.581401 |
Target: 5'- cGGCGGCGcGGCGCacggCCCGCucggGCcCGGc -3' miRNA: 3'- cUCGCCGU-CCGCGa---GGGCG----CGcGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 185535 | 0.66 | 0.54452 |
Target: 5'- cGAGgGGguGGCcuaccgGC-CCCGCgGCGUGGc -3' miRNA: 3'- -CUCgCCguCCG------CGaGGGCG-CGCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 87982 | 0.66 | 0.581401 |
Target: 5'- gGGGCcGC-GGCGC-CCCGa-CGCGGAg -3' miRNA: 3'- -CUCGcCGuCCGCGaGGGCgcGCGCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 117117 | 0.66 | 0.562879 |
Target: 5'- cAGCGGCAcGGgGC-CCCGuCG-GCGGc -3' miRNA: 3'- cUCGCCGU-CCgCGaGGGC-GCgCGCCu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 183934 | 0.66 | 0.543607 |
Target: 5'- cAGCGGCucGGCugguucuGCUCCCGggaCGCGCGc- -3' miRNA: 3'- cUCGCCGu-CCG-------CGAGGGC---GCGCGCcu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 179312 | 0.66 | 0.535413 |
Target: 5'- cGGGCGGCgAGGCGggcagaUCCUGCaGCGCc-- -3' miRNA: 3'- -CUCGCCG-UCCGCg-----AGGGCG-CGCGccu -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 158315 | 0.66 | 0.572122 |
Target: 5'- -cGCGGUcguccGGCGCgagUCCGCGCucCGGAc -3' miRNA: 3'- cuCGCCGu----CCGCGa--GGGCGCGc-GCCU- -5' |
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8943 | 5' | -66 | NC_002512.2 | + | 214928 | 0.66 | 0.572122 |
Target: 5'- -cGCGGCcgcGGCuucgucCUCCCGUGgcCGCGGAc -3' miRNA: 3'- cuCGCCGu--CCGc-----GAGGGCGC--GCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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