miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 135973 0.68 0.887851
Target:  5'- cCCGUCUggGAgggcgCGGGGuucGGggGAGGGa -3'
miRNA:   3'- cGGCAGGagCUa----GCCCU---CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 64105 0.68 0.883896
Target:  5'- -aCGUCCUCGA-CGGGcgcgcaggagccgauGGuGAAGAGGu -3'
miRNA:   3'- cgGCAGGAGCUaGCCC---------------UC-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 149326 0.68 0.881218
Target:  5'- cGCCG-CCggaGGgagaaGaGGAGGAGGAGGAa -3'
miRNA:   3'- -CGGCaGGag-CUag---C-CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 94823 0.68 0.881218
Target:  5'- aGCCGUCC-CGGagccgCcGGAGGAAGAGc- -3'
miRNA:   3'- -CGGCAGGaGCUa----GcCCUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 226230 0.68 0.881218
Target:  5'- aCCGUCggccgCGAgggggCcGGAGGAGGAGGAg -3'
miRNA:   3'- cGGCAGga---GCUa----GcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63447 0.68 0.874381
Target:  5'- cGCCGUcgcCCcCGGaggaCGGcGGGGAAGAGGGc -3'
miRNA:   3'- -CGGCA---GGaGCUa---GCC-CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 89866 0.68 0.874381
Target:  5'- gGUCGUCUUCGGggaCGGGAcggGGAugucGAGGGc -3'
miRNA:   3'- -CGGCAGGAGCUa--GCCCU---CCUu---CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 90489 0.68 0.874381
Target:  5'- gGgCGUCCUCGA-CGGGAucggGGccGAGGc -3'
miRNA:   3'- -CgGCAGGAGCUaGCCCU----CCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 80771 0.69 0.867347
Target:  5'- --gGUCCUCGcggcUCGaGGAGGAgcggcgcgaGGAGGAg -3'
miRNA:   3'- cggCAGGAGCu---AGC-CCUCCU---------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 99869 0.69 0.867347
Target:  5'- uCCGUCUUCGAcgugcuggacCGGGAGGAGgcgcggcccgucGAGGGc -3'
miRNA:   3'- cGGCAGGAGCUa---------GCCCUCCUU------------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 79963 0.69 0.867347
Target:  5'- uGCCGUCggaagCGGUCGGccGAGGAGGGcgcgcGGAg -3'
miRNA:   3'- -CGGCAGga---GCUAGCC--CUCCUUCU-----CCU- -5'
8944 5' -56.7 NC_002512.2 + 102851 0.69 0.866633
Target:  5'- cGCCGuacgcguaUCC-CGAcCGGGGGGAcgccuacGGGGGAc -3'
miRNA:   3'- -CGGC--------AGGaGCUaGCCCUCCU-------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 101786 0.69 0.860118
Target:  5'- cGCCGUCCUCGcggCGGagcgcuuccGAGGAGGcuuccuGGGc -3'
miRNA:   3'- -CGGCAGGAGCua-GCC---------CUCCUUCu-----CCU- -5'
8944 5' -56.7 NC_002512.2 + 134149 0.69 0.860118
Target:  5'- cGCgCGUCC-CGGcCGGcGGGGAcGGGGAg -3'
miRNA:   3'- -CG-GCAGGaGCUaGCC-CUCCUuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153057 0.69 0.860118
Target:  5'- aGCgGUCCcCGGUCGGGucggcGGucGAGGc -3'
miRNA:   3'- -CGgCAGGaGCUAGCCCu----CCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 223309 0.69 0.852702
Target:  5'- cGCCGgucgacaCCgugaaCGGUCGGGAGGAc-GGGAc -3'
miRNA:   3'- -CGGCa------GGa----GCUAGCCCUCCUucUCCU- -5'
8944 5' -56.7 NC_002512.2 + 31649 0.69 0.850441
Target:  5'- gGCCGUCCcggacggcgCGGgcgCGGccgugguggcggacGGGGAGGAGGAc -3'
miRNA:   3'- -CGGCAGGa--------GCUa--GCC--------------CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 103936 0.69 0.845102
Target:  5'- -gUGUCgUCGAg-GGGcGGAAGAGGAa -3'
miRNA:   3'- cgGCAGgAGCUagCCCuCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 121064 0.69 0.837326
Target:  5'- cGCCG-CC-CGAggCGcGGAGGAAGcGGAc -3'
miRNA:   3'- -CGGCaGGaGCUa-GC-CCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 38245 0.69 0.837326
Target:  5'- cGCCGUCCUggcucCGAUCGGGc----GAGGGa -3'
miRNA:   3'- -CGGCAGGA-----GCUAGCCCuccuuCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.