miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 70695 0.67 0.917863
Target:  5'- aCCGgCCgggCGGgggaCGGGGGGAcgGGGGGAc -3'
miRNA:   3'- cGGCaGGa--GCUa---GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 221335 0.67 0.917863
Target:  5'- uGCCuUCgCUCGAccgCGGGAGaagauGGAGGAg -3'
miRNA:   3'- -CGGcAG-GAGCUa--GCCCUCcu---UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 86584 0.67 0.917316
Target:  5'- uCCGUCCUucgcucgccgcgaUGGUCGGGGGGAgcGGucGGu -3'
miRNA:   3'- cGGCAGGA-------------GCUAGCCCUCCU--UCucCU- -5'
8944 5' -56.7 NC_002512.2 + 158903 0.67 0.91229
Target:  5'- cCCGUCCUCGGUCGcGGccGAGuacggcuucggcGGGGGc -3'
miRNA:   3'- cGGCAGGAGCUAGC-CCucCUU------------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 120447 0.67 0.91229
Target:  5'- cGCCGUCCUCGcugguguugcgcAUCGuGuuucGcGAAGAGGAg -3'
miRNA:   3'- -CGGCAGGAGC------------UAGCcCu---C-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 219934 0.67 0.91229
Target:  5'- uCCGUCgaCGcgCGGG-GGAGGGuGGAu -3'
miRNA:   3'- cGGCAGgaGCuaGCCCuCCUUCU-CCU- -5'
8944 5' -56.7 NC_002512.2 + 101770 0.67 0.91229
Target:  5'- uCCGUCggCGGgaacccUCGGGAGG-AGAGGc -3'
miRNA:   3'- cGGCAGgaGCU------AGCCCUCCuUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 123178 0.68 0.906501
Target:  5'- gGCCGaggCCgaggCGGgaCGGGAcGAGGAGGAg -3'
miRNA:   3'- -CGGCa--GGa---GCUa-GCCCUcCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 200390 0.68 0.90591
Target:  5'- gGCUGcaggaUCUCGGcCGGGAGGGagcagacGGAGGAg -3'
miRNA:   3'- -CGGCa----GGAGCUaGCCCUCCU-------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 166440 0.68 0.905317
Target:  5'- cGCCGUCCUcCGGgggcgacggcgcCGGGcucgAGGgcGGGGAc -3'
miRNA:   3'- -CGGCAGGA-GCUa-----------GCCC----UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 112644 0.68 0.904722
Target:  5'- gGCCG-CCagGGUCGGGucggaguagaagcgGuGGAAGGGGAu -3'
miRNA:   3'- -CGGCaGGagCUAGCCC--------------U-CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 189708 0.68 0.902924
Target:  5'- -aCGUCCgggggaugucggggCGGUgGGGAGGcagggacagGAGAGGAg -3'
miRNA:   3'- cgGCAGGa-------------GCUAgCCCUCC---------UUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 165708 0.68 0.900496
Target:  5'- -gCGUCUgcuUCGucGUCGGGGGGucGGGGGc -3'
miRNA:   3'- cgGCAGG---AGC--UAGCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 100469 0.68 0.900496
Target:  5'- aGCgCGUUCUCGGUCGuGGcccGGAccuuGGGGAg -3'
miRNA:   3'- -CG-GCAGGAGCUAGC-CCu--CCUu---CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 184671 0.68 0.900496
Target:  5'- aUCGU-CUCGAUCGGGuGGGucGGGGu -3'
miRNA:   3'- cGGCAgGAGCUAGCCC-UCCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 71236 0.68 0.900496
Target:  5'- aCCGUggCCUCGAcgUCGGGGucGAAGGGGu -3'
miRNA:   3'- cGGCA--GGAGCU--AGCCCUc-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 152957 0.68 0.894279
Target:  5'- aGCgGUCCcCGGUCGGGucggcGGGAGcGGu -3'
miRNA:   3'- -CGgCAGGaGCUAGCCCu----CCUUCuCCu -5'
8944 5' -56.7 NC_002512.2 + 130964 0.68 0.894279
Target:  5'- aCCG-CCUUauAUCGGGAgaccucGGAGGAGGAg -3'
miRNA:   3'- cGGCaGGAGc-UAGCCCU------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153007 0.68 0.894279
Target:  5'- aGCgGUCCcCGGUCGGGucggcGGGAGcGGu -3'
miRNA:   3'- -CGgCAGGaGCUAGCCCu----CCUUCuCCu -5'
8944 5' -56.7 NC_002512.2 + 135973 0.68 0.887851
Target:  5'- cCCGUCUggGAgggcgCGGGGuucGGggGAGGGa -3'
miRNA:   3'- cGGCAGGagCUa----GCCCU---CCuuCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.