miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 105157 0.67 0.923218
Target:  5'- cGCCGUgUa-GAUCuuGGcGAGGGAGGGGAa -3'
miRNA:   3'- -CGGCAgGagCUAG--CC-CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 197895 0.67 0.923218
Target:  5'- cCCgGUUCUCGGggaGGGGGGGAcGGGAc -3'
miRNA:   3'- cGG-CAGGAGCUag-CCCUCCUUcUCCU- -5'
8944 5' -56.7 NC_002512.2 + 113193 0.67 0.93182
Target:  5'- cGCCGUCCgcuccgCGAgCGGGAGccggguccucgcccGggGAGa- -3'
miRNA:   3'- -CGGCAGGa-----GCUaGCCCUC--------------CuuCUCcu -5'
8944 5' -56.7 NC_002512.2 + 199632 0.67 0.935178
Target:  5'- cGCgCGUCCgCGGggacccguuucccgCGgacGGAGGAGGGGGAg -3'
miRNA:   3'- -CG-GCAGGaGCUa-------------GC---CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 183496 0.67 0.933272
Target:  5'- gGCCG-CCUaCGGcCGcGAGGggGAGGc -3'
miRNA:   3'- -CGGCaGGA-GCUaGCcCUCCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 145779 0.67 0.937971
Target:  5'- cGCUGUggCCg----CGGGAGGAGGuGGAg -3'
miRNA:   3'- -CGGCA--GGagcuaGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 226196 0.67 0.937971
Target:  5'- gGUCGaCCUCcGUCGGGGacGGGAGGAc -3'
miRNA:   3'- -CGGCaGGAGcUAGCCCUccUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 200390 0.68 0.90591
Target:  5'- gGCUGcaggaUCUCGGcCGGGAGGGagcagacGGAGGAg -3'
miRNA:   3'- -CGGCa----GGAGCUaGCCCUCCU-------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 123178 0.68 0.906501
Target:  5'- gGCCGaggCCgaggCGGgaCGGGAcGAGGAGGAg -3'
miRNA:   3'- -CGGCa--GGa---GCUa-GCCCUcCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 112644 0.68 0.904722
Target:  5'- gGCCG-CCagGGUCGGGucggaguagaagcgGuGGAAGGGGAu -3'
miRNA:   3'- -CGGCaGGagCUAGCCC--------------U-CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 166440 0.68 0.905317
Target:  5'- cGCCGUCCUcCGGgggcgacggcgcCGGGcucgAGGgcGGGGAc -3'
miRNA:   3'- -CGGCAGGA-GCUa-----------GCCC----UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 189708 0.68 0.902924
Target:  5'- -aCGUCCgggggaugucggggCGGUgGGGAGGcagggacagGAGAGGAg -3'
miRNA:   3'- cgGCAGGa-------------GCUAgCCCUCC---------UUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 165708 0.68 0.900496
Target:  5'- -gCGUCUgcuUCGucGUCGGGGGGucGGGGGc -3'
miRNA:   3'- cgGCAGG---AGC--UAGCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 89866 0.68 0.874381
Target:  5'- gGUCGUCUUCGGggaCGGGAcggGGAugucGAGGGc -3'
miRNA:   3'- -CGGCAGGAGCUa--GCCCU---CCUu---CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63447 0.68 0.874381
Target:  5'- cGCCGUcgcCCcCGGaggaCGGcGGGGAAGAGGGc -3'
miRNA:   3'- -CGGCA---GGaGCUa---GCC-CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 64105 0.68 0.883896
Target:  5'- -aCGUCCUCGA-CGGGcgcgcaggagccgauGGuGAAGAGGu -3'
miRNA:   3'- cgGCAGGAGCUaGCCC---------------UC-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 18664 0.68 0.887851
Target:  5'- aGUCGUaguaCUCG-UCGGaGAGGAAGAGc- -3'
miRNA:   3'- -CGGCAg---GAGCuAGCC-CUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 135973 0.68 0.887851
Target:  5'- cCCGUCUggGAgggcgCGGGGuucGGggGAGGGa -3'
miRNA:   3'- cGGCAGGagCUa----GCCCU---CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 71236 0.68 0.900496
Target:  5'- aCCGUggCCUCGAcgUCGGGGucGAAGGGGu -3'
miRNA:   3'- cGGCA--GGAGCU--AGCCCUc-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 184671 0.68 0.900496
Target:  5'- aUCGU-CUCGAUCGGGuGGGucGGGGu -3'
miRNA:   3'- cGGCAgGAGCUAGCCC-UCCuuCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.