miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 125202 0.7 0.812998
Target:  5'- gGCCGUCCagGA-CGcGGAGGAGGAa-- -3'
miRNA:   3'- -CGGCAGGagCUaGC-CCUCCUUCUccu -5'
8944 5' -56.7 NC_002512.2 + 63129 0.7 0.812998
Target:  5'- aGCCGUCCaCGAgcaGGGuGGAguaacAGAGGu -3'
miRNA:   3'- -CGGCAGGaGCUag-CCCuCCU-----UCUCCu -5'
8944 5' -56.7 NC_002512.2 + 59289 0.7 0.812998
Target:  5'- cGUCGUgCUCGAcggacUCGGGucGGGAcacggcgacGGAGGAg -3'
miRNA:   3'- -CGGCAgGAGCU-----AGCCC--UCCU---------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 63104 0.7 0.812998
Target:  5'- -aCGUCCUCGucCGGGAcgGGAGGAGa- -3'
miRNA:   3'- cgGCAGGAGCuaGCCCU--CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 187010 0.7 0.821267
Target:  5'- gGCCuGUacgCGggCGuGGAGGAGGAGGAc -3'
miRNA:   3'- -CGG-CAggaGCuaGC-CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 95689 0.7 0.821267
Target:  5'- cGCCGggCCUCcggCGGGGacggggggccGGGAGGGGAa -3'
miRNA:   3'- -CGGCa-GGAGcuaGCCCU----------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 65734 0.7 0.821267
Target:  5'- gGgUGUCCUCGAUgaucUGGGu-GAAGAGGAa -3'
miRNA:   3'- -CgGCAGGAGCUA----GCCCucCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 70790 0.7 0.821267
Target:  5'- cGUCGUCCUCG-UCGccguugcgcaGGuuGGggGAGGGg -3'
miRNA:   3'- -CGGCAGGAGCuAGC----------CCu-CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 152704 0.7 0.828574
Target:  5'- -gCGUCCcCGGUCGGGgugcggcGGGcAGGGGAc -3'
miRNA:   3'- cgGCAGGaGCUAGCCC-------UCCuUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 103235 0.7 0.829378
Target:  5'- cGCCGcCCgUCGAcggccgCGGcGAGGGcauGGAGGAg -3'
miRNA:   3'- -CGGCaGG-AGCUa-----GCC-CUCCU---UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 171848 0.7 0.829378
Target:  5'- aCgGUCCggccgCGGcCGGGAGGggGcGGAa -3'
miRNA:   3'- cGgCAGGa----GCUaGCCCUCCuuCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 121064 0.69 0.837326
Target:  5'- cGCCG-CC-CGAggCGcGGAGGAAGcGGAc -3'
miRNA:   3'- -CGGCaGGaGCUa-GC-CCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 38245 0.69 0.837326
Target:  5'- cGCCGUCCUggcucCGAUCGGGc----GAGGGa -3'
miRNA:   3'- -CGGCAGGA-----GCUAGCCCuccuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 103936 0.69 0.845102
Target:  5'- -gUGUCgUCGAg-GGGcGGAAGAGGAa -3'
miRNA:   3'- cgGCAGgAGCUagCCCuCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 31649 0.69 0.850441
Target:  5'- gGCCGUCCcggacggcgCGGgcgCGGccgugguggcggacGGGGAGGAGGAc -3'
miRNA:   3'- -CGGCAGGa--------GCUa--GCC--------------CUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 223309 0.69 0.852702
Target:  5'- cGCCGgucgacaCCgugaaCGGUCGGGAGGAc-GGGAc -3'
miRNA:   3'- -CGGCa------GGa----GCUAGCCCUCCUucUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153057 0.69 0.860118
Target:  5'- aGCgGUCCcCGGUCGGGucggcGGucGAGGc -3'
miRNA:   3'- -CGgCAGGaGCUAGCCCu----CCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 101786 0.69 0.860118
Target:  5'- cGCCGUCCUCGcggCGGagcgcuuccGAGGAGGcuuccuGGGc -3'
miRNA:   3'- -CGGCAGGAGCua-GCC---------CUCCUUCu-----CCU- -5'
8944 5' -56.7 NC_002512.2 + 134149 0.69 0.860118
Target:  5'- cGCgCGUCC-CGGcCGGcGGGGAcGGGGAg -3'
miRNA:   3'- -CG-GCAGGaGCUaGCC-CUCCUuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 102851 0.69 0.866633
Target:  5'- cGCCGuacgcguaUCC-CGAcCGGGGGGAcgccuacGGGGGAc -3'
miRNA:   3'- -CGGC--------AGGaGCUaGCCCUCCU-------UCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.