miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 150556 0.72 0.684963
Target:  5'- cGCCGcgaCCUgGGagGGGAGGAGGAGcGGg -3'
miRNA:   3'- -CGGCa--GGAgCUagCCCUCCUUCUC-CU- -5'
8944 5' -56.7 NC_002512.2 + 155924 0.72 0.693662
Target:  5'- -gCGUCCUCcagcuUCGGGAgcagcggcgacgaGGAGGAGGAg -3'
miRNA:   3'- cgGCAGGAGcu---AGCCCU-------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 205300 0.72 0.704243
Target:  5'- aGCgGUCCccgcgUCGAcggacCGGGAGGGagGGAGGAg -3'
miRNA:   3'- -CGgCAGG-----AGCUa----GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 228087 0.72 0.704243
Target:  5'- gGCUG-CacaCGGUCGGGAGcGAGGAGGGc -3'
miRNA:   3'- -CGGCaGga-GCUAGCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 161956 0.72 0.704243
Target:  5'- uCCGUCCgga---GGGAGGAAGAGGc -3'
miRNA:   3'- cGGCAGGagcuagCCCUCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 118283 0.72 0.713804
Target:  5'- gGCCGcCCUCG-UCcGGAGGAAGAuccGGGc -3'
miRNA:   3'- -CGGCaGGAGCuAGcCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 127200 0.71 0.732726
Target:  5'- cGCCGacgCC-CGAgaCGGGGGGAuGAGGGa -3'
miRNA:   3'- -CGGCa--GGaGCUa-GCCCUCCUuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 101513 0.71 0.742072
Target:  5'- cGCCG-CCggCGAcgGGGAGGgcGAGGGg -3'
miRNA:   3'- -CGGCaGGa-GCUagCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153811 0.71 0.750408
Target:  5'- cGCCGguUCCUCGucGUCGuccgaagaacggaGGAGGGAGaAGGAg -3'
miRNA:   3'- -CGGC--AGGAGC--UAGC-------------CCUCCUUC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 91575 0.71 0.760491
Target:  5'- uGCCaGggCUCGGgcgcguguuUCGGGAGGAAGuGGAu -3'
miRNA:   3'- -CGG-CagGAGCU---------AGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 154547 0.71 0.769548
Target:  5'- cGCCGccuccgCCUCGGUCGccauGGGGggGcAGGAu -3'
miRNA:   3'- -CGGCa-----GGAGCUAGCc---CUCCuuC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 88889 0.71 0.778494
Target:  5'- cGCCGUCCUucgCGAUCGcGGuccguucGGGAGcGGAc -3'
miRNA:   3'- -CGGCAGGA---GCUAGC-CCu------CCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 21229 0.71 0.778494
Target:  5'- cGCCGcCCggggCGGagaCGGGGGcGGAGAGGGc -3'
miRNA:   3'- -CGGCaGGa---GCUa--GCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 226448 0.71 0.779382
Target:  5'- cGCCGUCaccgaccagccccgCGAggCGGGAGGAGGccGGGGc -3'
miRNA:   3'- -CGGCAGga------------GCUa-GCCCUCCUUC--UCCU- -5'
8944 5' -56.7 NC_002512.2 + 79866 0.7 0.787319
Target:  5'- cUCGUCCUCGGa--GGAGGAAGAGa- -3'
miRNA:   3'- cGGCAGGAGCUagcCCUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 54414 0.7 0.787319
Target:  5'- -aCGUCCUgGAcggccugCuGGGGGAAGAGGAc -3'
miRNA:   3'- cgGCAGGAgCUa------GcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 124546 0.7 0.796017
Target:  5'- cGCCaacuccuaCCUCG-UCGGcGAGGAGGAGGc -3'
miRNA:   3'- -CGGca------GGAGCuAGCC-CUCCUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 83201 0.7 0.796017
Target:  5'- cCCGUCCgcgcgCGGggCGGGGGGAGcgucggucccGGGGAa -3'
miRNA:   3'- cGGCAGGa----GCUa-GCCCUCCUU----------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 121827 0.7 0.804579
Target:  5'- cGCCGUCggcCGGaCGGGGGGGaggacggcggGGAGGAc -3'
miRNA:   3'- -CGGCAGga-GCUaGCCCUCCU----------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 139803 0.7 0.804579
Target:  5'- gGCCGgcgggggCCUCGGUCGGGuguccaAGGAcGuGGGc -3'
miRNA:   3'- -CGGCa------GGAGCUAGCCC------UCCUuCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.