miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 70695 0.67 0.917863
Target:  5'- aCCGgCCgggCGGgggaCGGGGGGAcgGGGGGAc -3'
miRNA:   3'- cGGCaGGa--GCUa---GCCCUCCU--UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 70790 0.7 0.821267
Target:  5'- cGUCGUCCUCG-UCGccguugcgcaGGuuGGggGAGGGg -3'
miRNA:   3'- -CGGCAGGAGCuAGC----------CCu-CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 71236 0.68 0.900496
Target:  5'- aCCGUggCCUCGAcgUCGGGGucGAAGGGGu -3'
miRNA:   3'- cGGCA--GGAGCU--AGCCCUc-CUUCUCCu -5'
8944 5' -56.7 NC_002512.2 + 75419 0.66 0.954611
Target:  5'- uGCC-UCCUCGAgggCGGGAcguccGGAucGGGGc -3'
miRNA:   3'- -CGGcAGGAGCUa--GCCCU-----CCUu-CUCCu -5'
8944 5' -56.7 NC_002512.2 + 79866 0.7 0.787319
Target:  5'- cUCGUCCUCGGa--GGAGGAAGAGa- -3'
miRNA:   3'- cGGCAGGAGCUagcCCUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 79963 0.69 0.867347
Target:  5'- uGCCGUCggaagCGGUCGGccGAGGAGGGcgcgcGGAg -3'
miRNA:   3'- -CGGCAGga---GCUAGCC--CUCCUUCU-----CCU- -5'
8944 5' -56.7 NC_002512.2 + 80771 0.69 0.867347
Target:  5'- --gGUCCUCGcggcUCGaGGAGGAgcggcgcgaGGAGGAg -3'
miRNA:   3'- cggCAGGAGCu---AGC-CCUCCU---------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 83201 0.7 0.796017
Target:  5'- cCCGUCCgcgcgCGGggCGGGGGGAGcgucggucccGGGGAa -3'
miRNA:   3'- cGGCAGGa----GCUa-GCCCUCCUU----------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 86218 0.66 0.954611
Target:  5'- cGCCcggCUUCGGggaGGGGGacGAGGAGGAc -3'
miRNA:   3'- -CGGca-GGAGCUag-CCCUC--CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 86516 0.66 0.954611
Target:  5'- aGCCGUCCUUGAgcgGGGAGGc------ -3'
miRNA:   3'- -CGGCAGGAGCUag-CCCUCCuucuccu -5'
8944 5' -56.7 NC_002512.2 + 86584 0.67 0.917316
Target:  5'- uCCGUCCUucgcucgccgcgaUGGUCGGGGGGAgcGGucGGu -3'
miRNA:   3'- cGGCAGGA-------------GCUAGCCCUCCU--UCucCU- -5'
8944 5' -56.7 NC_002512.2 + 88183 0.66 0.958243
Target:  5'- -gCGUCCggGAUCGaGGAGGGAGucGu -3'
miRNA:   3'- cgGCAGGagCUAGC-CCUCCUUCucCu -5'
8944 5' -56.7 NC_002512.2 + 88889 0.71 0.778494
Target:  5'- cGCCGUCCUucgCGAUCGcGGuccguucGGGAGcGGAc -3'
miRNA:   3'- -CGGCAGGA---GCUAGC-CCu------CCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 89866 0.68 0.874381
Target:  5'- gGUCGUCUUCGGggaCGGGAcggGGAugucGAGGGc -3'
miRNA:   3'- -CGGCAGGAGCUa--GCCCU---CCUu---CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 90489 0.68 0.874381
Target:  5'- gGgCGUCCUCGA-CGGGAucggGGccGAGGc -3'
miRNA:   3'- -CgGCAGGAGCUaGCCCU----CCuuCUCCu -5'
8944 5' -56.7 NC_002512.2 + 91575 0.71 0.760491
Target:  5'- uGCCaGggCUCGGgcgcguguuUCGGGAGGAAGuGGAu -3'
miRNA:   3'- -CGG-CagGAGCU---------AGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 92651 0.73 0.626402
Target:  5'- cGCCGgugUCCUCG-UCGGGAccgGGGAGAGa- -3'
miRNA:   3'- -CGGC---AGGAGCuAGCCCU---CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 94823 0.68 0.881218
Target:  5'- aGCCGUCC-CGGagccgCcGGAGGAAGAGc- -3'
miRNA:   3'- -CGGCAGGaGCUa----GcCCUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 95689 0.7 0.821267
Target:  5'- cGCCGggCCUCcggCGGGGacggggggccGGGAGGGGAa -3'
miRNA:   3'- -CGGCa-GGAGcuaGCCCU----------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 95911 0.66 0.946718
Target:  5'- uGCCGacgaggaCCUCGAUgGGGGuGAAG-GGAc -3'
miRNA:   3'- -CGGCa------GGAGCUAgCCCUcCUUCuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.