miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 88889 0.71 0.778494
Target:  5'- cGCCGUCCUucgCGAUCGcGGuccguucGGGAGcGGAc -3'
miRNA:   3'- -CGGCAGGA---GCUAGC-CCu------CCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 103452 0.77 0.430496
Target:  5'- cGCCGUCgC-CGGcCGGGcGGGAGGAGGAg -3'
miRNA:   3'- -CGGCAG-GaGCUaGCCC-UCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 119448 0.76 0.483395
Target:  5'- uGCgCGUCCUCcgccucuaGAUCGGGcGGAAGuGGAa -3'
miRNA:   3'- -CG-GCAGGAG--------CUAGCCCuCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 139270 0.76 0.483395
Target:  5'- cGCCGcCCggCGcgCGGGGGcGAAGGGGGg -3'
miRNA:   3'- -CGGCaGGa-GCuaGCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 47721 0.76 0.510993
Target:  5'- cGCCG-CCUCG--CGGGAGGAGGGcucGGAa -3'
miRNA:   3'- -CGGCaGGAGCuaGCCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 4497 0.75 0.54589
Target:  5'- cGCCGUCCcCGAagaggauggacgcgaGGGuGGAGGAGGAg -3'
miRNA:   3'- -CGGCAGGaGCUag-------------CCCuCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 100254 0.75 0.558337
Target:  5'- -gCGUCCUCGGagagCGGGAGG-AGAcGGAg -3'
miRNA:   3'- cgGCAGGAGCUa---GCCCUCCuUCU-CCU- -5'
8944 5' -56.7 NC_002512.2 + 98360 0.74 0.587343
Target:  5'- uCCG-CCUCGucucccuccggcGUCGuGGGGGAAGAGGGg -3'
miRNA:   3'- cGGCaGGAGC------------UAGC-CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 133809 0.74 0.606838
Target:  5'- gGUCGcgCCg-GGUgCGGGGGGAAGAGGAg -3'
miRNA:   3'- -CGGCa-GGagCUA-GCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 3971 0.74 0.606838
Target:  5'- cGUCGUCCccUCGGucgacgcgcuccUCGGGAGGcGGGGGGc -3'
miRNA:   3'- -CGGCAGG--AGCU------------AGCCCUCCuUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 92651 0.73 0.626402
Target:  5'- cGCCGgugUCCUCG-UCGGGAccgGGGAGAGa- -3'
miRNA:   3'- -CGGC---AGGAGCuAGCCCU---CCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 131014 0.73 0.652829
Target:  5'- uUCGUCUUCGAcgcgcucgagggcgUCGGGGccgcGGggGAGGAc -3'
miRNA:   3'- cGGCAGGAGCU--------------AGCCCU----CCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 29251 0.72 0.684963
Target:  5'- uCCGUCCUcCGAcgGGGAcGAGGAGGAc -3'
miRNA:   3'- cGGCAGGA-GCUagCCCUcCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 118283 0.72 0.713804
Target:  5'- gGCCGcCCUCG-UCcGGAGGAAGAuccGGGc -3'
miRNA:   3'- -CGGCaGGAGCuAGcCCUCCUUCU---CCU- -5'
8944 5' -56.7 NC_002512.2 + 101513 0.71 0.742072
Target:  5'- cGCCG-CCggCGAcgGGGAGGgcGAGGGg -3'
miRNA:   3'- -CGGCaGGa-GCUagCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 153811 0.71 0.750408
Target:  5'- cGCCGguUCCUCGucGUCGuccgaagaacggaGGAGGGAGaAGGAg -3'
miRNA:   3'- -CGGC--AGGAGC--UAGC-------------CCUCCUUC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 91575 0.71 0.760491
Target:  5'- uGCCaGggCUCGGgcgcguguuUCGGGAGGAAGuGGAu -3'
miRNA:   3'- -CGG-CagGAGCU---------AGCCCUCCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 154547 0.71 0.769548
Target:  5'- cGCCGccuccgCCUCGGUCGccauGGGGggGcAGGAu -3'
miRNA:   3'- -CGGCa-----GGAGCUAGCc---CUCCuuC-UCCU- -5'
8944 5' -56.7 NC_002512.2 + 21229 0.71 0.778494
Target:  5'- cGCCGcCCggggCGGagaCGGGGGcGGAGAGGGc -3'
miRNA:   3'- -CGGCaGGa---GCUa--GCCCUC-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 54414 0.7 0.787319
Target:  5'- -aCGUCCUgGAcggccugCuGGGGGAAGAGGAc -3'
miRNA:   3'- cgGCAGGAgCUa------GcCCUCCUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.