miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8944 5' -56.7 NC_002512.2 + 221250 0.65 0.960664
Target:  5'- gGCCGgCCgcggCGGaagUCGGGGgacgcggggcgcguGGAGGGGGGg -3'
miRNA:   3'- -CGGCaGGa---GCU---AGCCCU--------------CCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 166440 0.68 0.905317
Target:  5'- cGCCGUCCUcCGGgggcgacggcgcCGGGcucgAGGgcGGGGAc -3'
miRNA:   3'- -CGGCAGGA-GCUa-----------GCCC----UCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 200390 0.68 0.90591
Target:  5'- gGCUGcaggaUCUCGGcCGGGAGGGagcagacGGAGGAg -3'
miRNA:   3'- -CGGCa----GGAGCUaGCCCUCCU-------UCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 199632 0.67 0.935178
Target:  5'- cGCgCGUCCgCGGggacccguuucccgCGgacGGAGGAGGGGGAg -3'
miRNA:   3'- -CG-GCAGGaGCUa-------------GC---CCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 95911 0.66 0.946718
Target:  5'- uGCCGacgaggaCCUCGAUgGGGGuGAAG-GGAc -3'
miRNA:   3'- -CGGCa------GGAGCUAgCCCUcCUUCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 152957 0.68 0.894279
Target:  5'- aGCgGUCCcCGGUCGGGucggcGGGAGcGGu -3'
miRNA:   3'- -CGgCAGGaGCUAGCCCu----CCUUCuCCu -5'
8944 5' -56.7 NC_002512.2 + 165708 0.68 0.900496
Target:  5'- -gCGUCUgcuUCGucGUCGGGGGGucGGGGGc -3'
miRNA:   3'- cgGCAGG---AGC--UAGCCCUCCuuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 195049 0.66 0.95077
Target:  5'- cGCCGcggCCcgCGggCGGGAGGGucguccggucGGGGAc -3'
miRNA:   3'- -CGGCa--GGa-GCuaGCCCUCCUu---------CUCCU- -5'
8944 5' -56.7 NC_002512.2 + 100806 0.67 0.923218
Target:  5'- cCCGUCCUCGGggUCGaccuGGAcGAGGAu -3'
miRNA:   3'- cGGCAGGAGCU--AGCccu-CCUuCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 197895 0.67 0.923218
Target:  5'- cCCgGUUCUCGGggaGGGGGGGAcGGGAc -3'
miRNA:   3'- cGG-CAGGAGCUag-CCCUCCUUcUCCU- -5'
8944 5' -56.7 NC_002512.2 + 96184 0.66 0.954611
Target:  5'- aCCGUCCggUGGUcCGGGAGGcggccgcGAGGu -3'
miRNA:   3'- cGGCAGGa-GCUA-GCCCUCCuu-----CUCCu -5'
8944 5' -56.7 NC_002512.2 + 170647 0.66 0.957175
Target:  5'- cGCCGgcgCCUCGccugcgguuuccucGUCGGGugagcguGGAGcAGGAg -3'
miRNA:   3'- -CGGCa--GGAGC--------------UAGCCCu------CCUUcUCCU- -5'
8944 5' -56.7 NC_002512.2 + 94823 0.68 0.881218
Target:  5'- aGCCGUCC-CGGagccgCcGGAGGAAGAGc- -3'
miRNA:   3'- -CGGCAGGaGCUa----GcCCUCCUUCUCcu -5'
8944 5' -56.7 NC_002512.2 + 226230 0.68 0.881218
Target:  5'- aCCGUCggccgCGAgggggCcGGAGGAGGAGGAg -3'
miRNA:   3'- cGGCAGga---GCUa----GcCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 120447 0.67 0.91229
Target:  5'- cGCCGUCCUCGcugguguugcgcAUCGuGuuucGcGAAGAGGAg -3'
miRNA:   3'- -CGGCAGGAGC------------UAGCcCu---C-CUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 150046 0.66 0.942452
Target:  5'- gGCCGgggaCgaCGGggCGGGAGGggG-GGAc -3'
miRNA:   3'- -CGGCa---GgaGCUa-GCCCUCCuuCuCCU- -5'
8944 5' -56.7 NC_002512.2 + 220167 0.66 0.946718
Target:  5'- cGUCGUgCUCugcGUCGGGAGGAGGuuccGcGAa -3'
miRNA:   3'- -CGGCAgGAGc--UAGCCCUCCUUCu---C-CU- -5'
8944 5' -56.7 NC_002512.2 + 193616 0.66 0.958243
Target:  5'- cGCgGg----GAUgGGGGGGAAGAGGAu -3'
miRNA:   3'- -CGgCaggagCUAgCCCUCCUUCUCCU- -5'
8944 5' -56.7 NC_002512.2 + 113193 0.67 0.93182
Target:  5'- cGCCGUCCgcuccgCGAgCGGGAGccggguccucgcccGggGAGa- -3'
miRNA:   3'- -CGGCAGGa-----GCUaGCCCUC--------------CuuCUCcu -5'
8944 5' -56.7 NC_002512.2 + 127026 0.67 0.923218
Target:  5'- aGgCGUCCcccCGGUCGGGAuacgcguacggcGGcGGAGGGa -3'
miRNA:   3'- -CgGCAGGa--GCUAGCCCU------------CCuUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.