Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 5' | -56.7 | NC_002512.2 | + | 197895 | 0.67 | 0.923218 |
Target: 5'- cCCgGUUCUCGGggaGGGGGGGAcGGGAc -3' miRNA: 3'- cGG-CAGGAGCUag-CCCUCCUUcUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 183496 | 0.67 | 0.933272 |
Target: 5'- gGCCG-CCUaCGGcCGcGAGGggGAGGc -3' miRNA: 3'- -CGGCaGGA-GCUaGCcCUCCuuCUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 200338 | 0.66 | 0.946718 |
Target: 5'- cGgCGUCCUCcugucggcgGA-CGGGGGGAcggggcGGGGGGu -3' miRNA: 3'- -CgGCAGGAG---------CUaGCCCUCCU------UCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 149515 | 0.66 | 0.958243 |
Target: 5'- gGCCGcggCCg-GAgCGGGccggccAGGAGGAGGAc -3' miRNA: 3'- -CGGCa--GGagCUaGCCC------UCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 130964 | 0.68 | 0.894279 |
Target: 5'- aCCG-CCUUauAUCGGGAgaccucGGAGGAGGAg -3' miRNA: 3'- cGGCaGGAGc-UAGCCCU------CCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 158903 | 0.67 | 0.91229 |
Target: 5'- cCCGUCCUCGGUCGcGGccGAGuacggcuucggcGGGGGc -3' miRNA: 3'- cGGCAGGAGCUAGC-CCucCUU------------CUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 226196 | 0.67 | 0.937971 |
Target: 5'- gGUCGaCCUCcGUCGGGGacGGGAGGAc -3' miRNA: 3'- -CGGCaGGAGcUAGCCCUccUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 189232 | 0.66 | 0.958243 |
Target: 5'- uCCGUCCgUCGccGUCGcGGAcgucaccgucgGGGAGAGGu -3' miRNA: 3'- cGGCAGG-AGC--UAGC-CCU-----------CCUUCUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 219934 | 0.67 | 0.91229 |
Target: 5'- uCCGUCgaCGcgCGGG-GGAGGGuGGAu -3' miRNA: 3'- cGGCAGgaGCuaGCCCuCCUUCU-CCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 223817 | 0.66 | 0.959639 |
Target: 5'- cGCCGggacgacgacggcgCgUCGGagGGGaAGGAGGAGGc -3' miRNA: 3'- -CGGCa-------------GgAGCUagCCC-UCCUUCUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 145779 | 0.67 | 0.937971 |
Target: 5'- cGCUGUggCCg----CGGGAGGAGGuGGAg -3' miRNA: 3'- -CGGCA--GGagcuaGCCCUCCUUCuCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 105157 | 0.67 | 0.923218 |
Target: 5'- cGCCGUgUa-GAUCuuGGcGAGGGAGGGGAa -3' miRNA: 3'- -CGGCAgGagCUAG--CC-CUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 99053 | 0.66 | 0.942452 |
Target: 5'- cGCCGguaCUCGAccgCGGGguuGGGGuggcuGAGGAu -3' miRNA: 3'- -CGGCag-GAGCUa--GCCC---UCCUu----CUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 151057 | 0.66 | 0.946718 |
Target: 5'- cGCgGUCCUCGA-CGGcGGGGGAuGcGGu -3' miRNA: 3'- -CGgCAGGAGCUaGCC-CUCCUU-CuCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 221370 | 0.66 | 0.954236 |
Target: 5'- uGUCGgugguguguccucUCCUCGggCGGGGcgcGGgcGGGGAg -3' miRNA: 3'- -CGGC-------------AGGAGCuaGCCCU---CCuuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 193616 | 0.66 | 0.958243 |
Target: 5'- cGCgGg----GAUgGGGGGGAAGAGGAu -3' miRNA: 3'- -CGgCaggagCUAgCCCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 149326 | 0.68 | 0.881218 |
Target: 5'- cGCCG-CCggaGGgagaaGaGGAGGAGGAGGAa -3' miRNA: 3'- -CGGCaGGag-CUag---C-CCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 153007 | 0.68 | 0.894279 |
Target: 5'- aGCgGUCCcCGGUCGGGucggcGGGAGcGGu -3' miRNA: 3'- -CGgCAGGaGCUAGCCCu----CCUUCuCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 189708 | 0.68 | 0.902924 |
Target: 5'- -aCGUCCgggggaugucggggCGGUgGGGAGGcagggacagGAGAGGAg -3' miRNA: 3'- cgGCAGGa-------------GCUAgCCCUCC---------UUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 120447 | 0.67 | 0.91229 |
Target: 5'- cGCCGUCCUCGcugguguugcgcAUCGuGuuucGcGAAGAGGAg -3' miRNA: 3'- -CGGCAGGAGC------------UAGCcCu---C-CUUCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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