Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8944 | 5' | -56.7 | NC_002512.2 | + | 221250 | 0.65 | 0.960664 |
Target: 5'- gGCCGgCCgcggCGGaagUCGGGGgacgcggggcgcguGGAGGGGGGg -3' miRNA: 3'- -CGGCaGGa---GCU---AGCCCU--------------CCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 166440 | 0.68 | 0.905317 |
Target: 5'- cGCCGUCCUcCGGgggcgacggcgcCGGGcucgAGGgcGGGGAc -3' miRNA: 3'- -CGGCAGGA-GCUa-----------GCCC----UCCuuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 200390 | 0.68 | 0.90591 |
Target: 5'- gGCUGcaggaUCUCGGcCGGGAGGGagcagacGGAGGAg -3' miRNA: 3'- -CGGCa----GGAGCUaGCCCUCCU-------UCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 199632 | 0.67 | 0.935178 |
Target: 5'- cGCgCGUCCgCGGggacccguuucccgCGgacGGAGGAGGGGGAg -3' miRNA: 3'- -CG-GCAGGaGCUa-------------GC---CCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 95911 | 0.66 | 0.946718 |
Target: 5'- uGCCGacgaggaCCUCGAUgGGGGuGAAG-GGAc -3' miRNA: 3'- -CGGCa------GGAGCUAgCCCUcCUUCuCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 152957 | 0.68 | 0.894279 |
Target: 5'- aGCgGUCCcCGGUCGGGucggcGGGAGcGGu -3' miRNA: 3'- -CGgCAGGaGCUAGCCCu----CCUUCuCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 165708 | 0.68 | 0.900496 |
Target: 5'- -gCGUCUgcuUCGucGUCGGGGGGucGGGGGc -3' miRNA: 3'- cgGCAGG---AGC--UAGCCCUCCuuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 195049 | 0.66 | 0.95077 |
Target: 5'- cGCCGcggCCcgCGggCGGGAGGGucguccggucGGGGAc -3' miRNA: 3'- -CGGCa--GGa-GCuaGCCCUCCUu---------CUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 100806 | 0.67 | 0.923218 |
Target: 5'- cCCGUCCUCGGggUCGaccuGGAcGAGGAu -3' miRNA: 3'- cGGCAGGAGCU--AGCccu-CCUuCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 197895 | 0.67 | 0.923218 |
Target: 5'- cCCgGUUCUCGGggaGGGGGGGAcGGGAc -3' miRNA: 3'- cGG-CAGGAGCUag-CCCUCCUUcUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 96184 | 0.66 | 0.954611 |
Target: 5'- aCCGUCCggUGGUcCGGGAGGcggccgcGAGGu -3' miRNA: 3'- cGGCAGGa-GCUA-GCCCUCCuu-----CUCCu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 170647 | 0.66 | 0.957175 |
Target: 5'- cGCCGgcgCCUCGccugcgguuuccucGUCGGGugagcguGGAGcAGGAg -3' miRNA: 3'- -CGGCa--GGAGC--------------UAGCCCu------CCUUcUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 94823 | 0.68 | 0.881218 |
Target: 5'- aGCCGUCC-CGGagccgCcGGAGGAAGAGc- -3' miRNA: 3'- -CGGCAGGaGCUa----GcCCUCCUUCUCcu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 226230 | 0.68 | 0.881218 |
Target: 5'- aCCGUCggccgCGAgggggCcGGAGGAGGAGGAg -3' miRNA: 3'- cGGCAGga---GCUa----GcCCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 120447 | 0.67 | 0.91229 |
Target: 5'- cGCCGUCCUCGcugguguugcgcAUCGuGuuucGcGAAGAGGAg -3' miRNA: 3'- -CGGCAGGAGC------------UAGCcCu---C-CUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 150046 | 0.66 | 0.942452 |
Target: 5'- gGCCGgggaCgaCGGggCGGGAGGggG-GGAc -3' miRNA: 3'- -CGGCa---GgaGCUa-GCCCUCCuuCuCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 220167 | 0.66 | 0.946718 |
Target: 5'- cGUCGUgCUCugcGUCGGGAGGAGGuuccGcGAa -3' miRNA: 3'- -CGGCAgGAGc--UAGCCCUCCUUCu---C-CU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 193616 | 0.66 | 0.958243 |
Target: 5'- cGCgGg----GAUgGGGGGGAAGAGGAu -3' miRNA: 3'- -CGgCaggagCUAgCCCUCCUUCUCCU- -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 113193 | 0.67 | 0.93182 |
Target: 5'- cGCCGUCCgcuccgCGAgCGGGAGccggguccucgcccGggGAGa- -3' miRNA: 3'- -CGGCAGGa-----GCUaGCCCUC--------------CuuCUCcu -5' |
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8944 | 5' | -56.7 | NC_002512.2 | + | 127026 | 0.67 | 0.923218 |
Target: 5'- aGgCGUCCcccCGGUCGGGAuacgcguacggcGGcGGAGGGa -3' miRNA: 3'- -CgGCAGGa--GCUAGCCCU------------CCuUCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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